Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   YSU_RS05500 Genome accession   NZ_CP007179
Coordinates   1103060..1103437 (-) Length   125 a.a.
NCBI ID   WP_194716130.1    Uniprot ID   -
Organism   Campylobacter coli RM5611     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098060..1108437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS05485 (YSU_05595) - 1099796..1100404 (+) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -
  YSU_RS05490 (YSU_05600) - 1100401..1101171 (+) 771 WP_002781608.1 sugar phosphate nucleotidyltransferase -
  YSU_RS05495 (YSU_05605) - 1101155..1102993 (-) 1839 WP_002804655.1 primosomal protein N' -
  YSU_RS05500 (YSU_05610) Cj0683 1103060..1103437 (-) 378 WP_194716130.1 type II secretion system protein Machinery gene
  YSU_RS05505 (YSU_05615) - 1103434..1103679 (-) 246 WP_002776428.1 hypothetical protein -
  YSU_RS05510 (YSU_05620) - 1103669..1103899 (-) 231 WP_002776426.1 hypothetical protein -
  YSU_RS05515 (YSU_05625) uvrB 1104053..1106026 (+) 1974 WP_002776424.1 excinuclease ABC subunit UvrB -
  YSU_RS05520 (YSU_05630) - 1106061..1107485 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14587.12 Da        Isoelectric Point: 10.2081

>NTDB_id=117168 YSU_RS05500 WP_194716130.1 1103060..1103437(-) (Cj0683) [Campylobacter coli RM5611]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQTELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFFKYKRMG

Nucleotide


Download         Length: 378 bp        

>NTDB_id=117168 YSU_RS05500 WP_194716130.1 1103060..1103437(-) (Cj0683) [Campylobacter coli RM5611]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTGTCTCTTA
TGCGCACTCAGACTGAACTTAAGCAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTTAAATACAAAAGAATGGGTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.29

99.2

0.608

Multiple sequence alignment