Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   YSU_RS02105 Genome accession   NZ_CP007179
Coordinates   429505..430473 (-) Length   322 a.a.
NCBI ID   WP_002780538.1    Uniprot ID   A0A400H2N3
Organism   Campylobacter coli RM5611     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424505..435473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS02085 (YSU_02110) - 426020..426652 (-) 633 WP_002799741.1 hypothetical protein -
  YSU_RS02090 (YSU_02115) - 426818..427807 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  YSU_RS02095 (YSU_02120) - 427822..428577 (-) 756 WP_002785724.1 ABC transporter ATP-binding protein -
  YSU_RS02100 (YSU_02125) - 428574..429512 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  YSU_RS02105 (YSU_02130) ceuB 429505..430473 (-) 969 WP_002780538.1 ABC transporter permease Machinery gene
  YSU_RS02110 (YSU_02135) - 430606..431499 (-) 894 WP_225847699.1 phospholipase A -
  YSU_RS02115 (YSU_02140) - 431598..432173 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  YSU_RS02120 (YSU_02145) - 432236..433543 (+) 1308 WP_002785729.1 NFACT family protein -
  YSU_RS02125 (YSU_02150) - 433545..433883 (+) 339 WP_002777761.1 hypothetical protein -
  YSU_RS02130 (YSU_02155) - 433892..434617 (+) 726 WP_002799735.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35535.38 Da        Isoelectric Point: 9.5069

>NTDB_id=117159 YSU_RS02105 WP_002780538.1 429505..430473(-) (ceuB) [Campylobacter coli RM5611]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=117159 YSU_RS02105 WP_002780538.1 429505..430473(-) (ceuB) [Campylobacter coli RM5611]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GACTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A400H2N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891

Multiple sequence alignment