Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   YSU_RS01820 Genome accession   NZ_CP007179
Coordinates   367555..368739 (+) Length   394 a.a.
NCBI ID   WP_002805172.1    Uniprot ID   A0A5T0TQ15
Organism   Campylobacter coli RM5611     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 362555..373739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS01805 (YSU_01820) - 363269..364000 (+) 732 WP_002787833.1 class II aldolase/adducin family protein -
  YSU_RS01810 (YSU_01825) - 363997..365493 (+) 1497 WP_002779173.1 sugar phosphate nucleotidyltransferase -
  YSU_RS01815 (YSU_01830) - 365531..367558 (+) 2028 WP_002805175.1 capsular polysaccharide biosynthesis protein -
  YSU_RS01820 (YSU_01835) kpsS 367555..368739 (+) 1185 WP_002805172.1 capsule biosynthesis protein Regulator
  YSU_RS01825 (YSU_01840) - 368807..369928 (+) 1122 WP_002805170.1 hypothetical protein -
  YSU_RS01830 (YSU_01845) - 369925..371295 (+) 1371 WP_002792165.1 cytochrome P450 -
  YSU_RS01835 (YSU_01850) - 371292..371714 (+) 423 WP_002779166.1 hypothetical protein -
  YSU_RS01840 (YSU_01855) acpS 371717..372064 (-) 348 WP_002779165.1 holo-ACP synthase -
  YSU_RS01845 (YSU_01860) fliL 372064..372600 (-) 537 WP_002805168.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46585.37 Da        Isoelectric Point: 9.9892

>NTDB_id=117157 YSU_RS01820 WP_002805172.1 367555..368739(+) (kpsS) [Campylobacter coli RM5611]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAILQVYSDTQIKYH
YKKSIEDFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVINFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=117157 YSU_RS01820 WP_002805172.1 367555..368739(+) (kpsS) [Campylobacter coli RM5611]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAACGGAGGAGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAACTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAGCGATACACAGATTAAGTATCAT
TATAAAAAAAGTATAGAAGATTTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGACAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCTACTCTTTTAAAAAAGGCTTTGGGTTGTATTACGATCAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTATAAATTTTAAAA
ATTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0TQ15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.579

100

0.886

Multiple sequence alignment