Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DYB47_RS09060 Genome accession   NZ_UHFV01000002
Coordinates   1806165..1806878 (+) Length   237 a.a.
NCBI ID   WP_040841624.1    Uniprot ID   -
Organism   Streptococcus macacae NCTC 11558     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801165..1811878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS09050 (NCTC11558_01837) treC 1802195..1803823 (-) 1629 WP_003078767.1 alpha,alpha-phosphotrehalase -
  DYB47_RS09055 (NCTC11558_01838) treP 1804047..1806011 (-) 1965 WP_003079208.1 PTS system trehalose-specific EIIBC component -
  DYB47_RS09060 (NCTC11558_01839) treR 1806165..1806878 (+) 714 WP_040841624.1 trehalose operon repressor Regulator
  DYB47_RS09065 (NCTC11558_01840) - 1807155..1809902 (-) 2748 WP_003082485.1 glycoside hydrolase family 66 protein -
  DYB47_RS09070 (NCTC11558_01841) dtd 1810140..1810583 (-) 444 WP_040841864.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27604.69 Da        Isoelectric Point: 7.5098

>NTDB_id=1171341 DYB47_RS09060 WP_040841624.1 1806165..1806878(+) (treR) [Streptococcus macacae NCTC 11558]
MKKYELIYKDLENKINKGDYAIEEYLPTEAELAQTYQVSRDTVRKALKLLNKAGLIRKMQGIGSKVIKHEHINFPVSELT
SYKEVTENLKIDSQTNVIAIDKLIVDAKVSQLTGFPIQSLVWRITRQRIVEGLASVLDIDYLLKDFVPEISREVAKTSIY
AYLENQLHLEIAYAQKEITIDQITDRDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRQHD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1171341 DYB47_RS09060 WP_040841624.1 1806165..1806878(+) (treR) [Streptococcus macacae NCTC 11558]
ATGAAAAAATATGAGCTTATTTATAAAGATCTAGAAAATAAAATCAATAAAGGCGACTATGCCATTGAAGAGTACTTACC
AACCGAAGCTGAACTCGCCCAGACTTACCAAGTGAGCCGAGATACCGTCAGAAAAGCTCTCAAGCTTTTAAACAAGGCAG
GTCTGATAAGAAAAATGCAAGGGATTGGCTCAAAGGTTATTAAGCATGAGCATATTAACTTTCCTGTCTCCGAATTAACC
AGCTATAAGGAAGTCACGGAAAATTTAAAGATCGATTCACAGACCAATGTCATTGCTATCGATAAACTCATCGTTGATGC
CAAAGTTAGTCAATTAACCGGTTTTCCCATCCAAAGTTTAGTCTGGCGCATAACTCGGCAGCGTATTGTTGAAGGACTTG
CTTCAGTCCTTGATATTGATTACCTGCTAAAAGATTTTGTCCCAGAGATAAGCCGGGAGGTTGCAAAGACCTCAATTTAT
GCTTATTTAGAAAATCAGCTTCACCTTGAAATTGCCTATGCCCAAAAGGAAATTACCATTGATCAGATTACCGACAGGGA
CAAAATTTTACTTGATTTAGACTCTGAAAACCATGTTGTCTCTGTTAAATCCAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTTACAGAAAGCCGGCACAAACTCGAAAAATTCCGCTTTGTTGATTTTGCCAGACGGCAGCATGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(93-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

69.62

100

0.696

Multiple sequence alignment