Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DYB47_RS01455 Genome accession   NZ_UHFV01000002
Coordinates   249725..251092 (+) Length   455 a.a.
NCBI ID   WP_081479324.1    Uniprot ID   -
Organism   Streptococcus macacae NCTC 11558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 244725..256092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS01425 (NCTC11558_00288) - 245449..245985 (+) 537 WP_003080282.1 5-formyltetrahydrofolate cyclo-ligase -
  DYB47_RS01430 (NCTC11558_00289) - 245972..246637 (+) 666 WP_003081543.1 rhomboid family protein -
  DYB47_RS01435 (NCTC11558_00290) galU 246682..247575 (-) 894 WP_003079692.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DYB47_RS01440 (NCTC11558_00291) - 247578..248597 (-) 1020 WP_003080491.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DYB47_RS01445 (NCTC11558_00292) - 248822..249265 (+) 444 WP_003079168.1 dUTP diphosphatase -
  DYB47_RS01450 (NCTC11558_00293) - 249267..249728 (+) 462 WP_003080399.1 isochorismatase family protein -
  DYB47_RS01455 (NCTC11558_00294) radA 249725..251092 (+) 1368 WP_081479324.1 DNA repair protein RadA Machinery gene
  DYB47_RS01460 (NCTC11558_00295) - 251188..251682 (+) 495 WP_003080782.1 beta-class carbonic anhydrase -
  DYB47_RS01465 (NCTC11558_00296) - 251846..252559 (+) 714 WP_003079918.1 TIGR00266 family protein -
  DYB47_RS01470 (NCTC11558_00297) gltX 252973..254430 (+) 1458 WP_003082214.1 glutamate--tRNA ligase -
  DYB47_RS01475 (NCTC11558_00298) - 254644..255849 (+) 1206 WP_003080087.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49844.27 Da        Isoelectric Point: 7.5856

>NTDB_id=1171300 DYB47_RS01455 WP_081479324.1 249725..251092(+) (radA) [Streptococcus macacae NCTC 11558]
MAKKKRTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVSEVKNARVSLTGEKTRPVKLNQVTSSQVSRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAKQGIVLYVSGEESAQQIKLRSERLGDIDNEFYLYAETNMQSIRAEIE
KIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTSPKDCFIGEIGLTGEIR
RVNRIEQRINEAGKLGFTKIYVPKNSLTGLAVSNTIQIIGVTTVNEVLERVFASR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1171300 DYB47_RS01455 WP_081479324.1 249725..251092(+) (radA) [Streptococcus macacae NCTC 11558]
ATAGCTAAGAAAAAAAGAACTTTTGTTTGTCAAGAATGCGGCTACAACTCGCCTAAATATTTAGGACGCTGCCCTAATTG
TTCCTCCTGGTCTTCTTTTGTGGAAGAAGTGGAAGTTTCAGAAGTTAAAAATGCGCGTGTTTCGCTGACAGGTGAAAAAA
CGCGCCCAGTCAAATTAAATCAGGTAACCTCCAGTCAGGTCTCCAGAACTAAAACCGAGATGGAGGAGTTCAATCGTGTT
CTGGGCGGTGGTGTTGTTCCGGGAAGTTTAGTTCTTATTGGCGGAGATCCTGGTATTGGAAAATCGACCTTGCTTCTACA
AGTTTCAACGCAGCTAGCCAAACAGGGAATCGTTCTTTACGTTTCTGGAGAAGAATCAGCTCAGCAAATCAAGCTGCGCA
GCGAACGTTTAGGTGATATTGACAATGAGTTTTATCTCTATGCGGAAACGAATATGCAGAGTATTCGCGCTGAGATTGAA
AAAATTCAGCCTGATTTTTTAATTATTGATTCTATTCAAACAGTTATGAGTCCAGAAATTTCCAGCGTTCAAGGTTCTGT
TTCCCAGGTACGCGAAGTAACCGCTGAGCTCATGCAGCTAGCTAAGACCAATAACATCGCTACCTTCATCGTTGGTCATG
TCACTAAGGAAGGAACACTGGCTGGACCTCGTATGCTCGAGCATATGGTGGATACTGTACTCTACTTTGAAGGGGAACGT
CAGCATACTTTTCGTATCTTAAGAGCTGTTAAAAATCGTTTTGGATCTACGAATGAAATTGGTATTTTTGAAATGCGATC
GGGTGGTTTGGTTGAGGTTTTAAATCCTAGTCAAGTCTTTTTGGAAGAGCGCCTAGATGGTGCGACCGGATCAGCTATTG
TTGTTACTATGGAAGGGACAAGGCCTATTTTAGCAGAGGTGCAGGCCCTTGTAACGCCAACAGTTTTTGGCAATGCCAAA
CGGACGACTACTGGTTTGGATTTCAATCGTGTCAGCCTGATTATGGCAGTTTTGGAGAAACGCTGCGGTTTGCTTTTGCA
AAATCAGGATGCTTATCTTAAATCAGCTGGAGGTGTACGGCTTGATGAGCCAGCTATTGACTTGGCCGTTGCGGTTGCGA
TTGCTTCTAGCTATAAAGAAAAGCCAACAAGCCCTAAGGACTGTTTTATCGGTGAGATTGGCTTAACAGGAGAGATACGG
CGTGTCAATCGGATAGAACAGCGTATTAATGAAGCTGGTAAATTAGGTTTTACAAAGATTTATGTGCCTAAAAATTCGTT
GACGGGATTAGCGGTTTCAAACACTATTCAGATTATTGGAGTAACAACAGTCAATGAAGTATTGGAAAGGGTATTTGCTT
CAAGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.404

99.56

0.89
  radA Streptococcus pneumoniae D39

89.404

99.56

0.89
  radA Streptococcus pneumoniae R6

89.404

99.56

0.89
  radA Streptococcus pneumoniae TIGR4

89.404

99.56

0.89
  radA Streptococcus mitis SK321

89.404

99.56

0.89
  radA Streptococcus mitis NCTC 12261

89.183

99.56

0.888
  radA Bacillus subtilis subsp. subtilis str. 168

61.726

99.341

0.613

Multiple sequence alignment