Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | C7S17_RS17540 | Genome accession | NZ_QXCS01000002 |
| Coordinates | 932207..933484 (+) | Length | 425 a.a. |
| NCBI ID | WP_009902750.1 | Uniprot ID | A0AAW9CYC5 |
| Organism | Burkholderia thailandensis strain SBXPR001 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 927207..938484
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7S17_RS17510 (C7S17_1001) | - | 927766..928380 (+) | 615 | WP_025369612.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| C7S17_RS17515 (C7S17_1002) | pth | 928494..929099 (+) | 606 | WP_019255509.1 | aminoacyl-tRNA hydrolase | - |
| C7S17_RS17520 (C7S17_1003) | hisC | 929173..930240 (+) | 1068 | WP_025987452.1 | histidinol-phosphate transaminase | - |
| C7S17_RS17525 (C7S17_1004) | - | 930386..930649 (-) | 264 | WP_009893077.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| C7S17_RS17530 (C7S17_1005) | coaD | 930714..931214 (-) | 501 | WP_004195249.1 | pantetheine-phosphate adenylyltransferase | - |
| C7S17_RS17535 (C7S17_1006) | rsmD | 931323..931949 (-) | 627 | WP_019255510.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| C7S17_RS17540 (C7S17_1008) | pilA | 932207..933484 (+) | 1278 | WP_009902750.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| C7S17_RS17545 (C7S17_1009) | maiA | 933642..934286 (-) | 645 | WP_009902749.1 | maleylacetoacetate isomerase | - |
| C7S17_RS17550 (C7S17_1011) | nirB | 934679..937123 (+) | 2445 | WP_009908434.1 | nitrite reductase large subunit NirB | - |
| C7S17_RS17555 (C7S17_1012) | nirD | 937199..937594 (+) | 396 | WP_009902747.1 | nitrite reductase small subunit NirD | - |
Sequence
Protein
Download Length: 425 a.a. Molecular weight: 44484.81 Da Isoelectric Point: 5.5405
>NTDB_id=1171249 C7S17_RS17540 WP_009902750.1 932207..933484(+) (pilA) [Burkholderia thailandensis strain SBXPR001]
MFSFFKRFKKAPDAAPAEPQQAPDAAGESAAPEAARVDAPAAPVSRGEYSEAPAAERPRSDAPAPVRATPPVSPAAATPE
SPAGQPSAAEAARAPSVVMTVTPAANGRNGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSITNVFVNTKIDDALY
EELETALLMSDAGVDATEHLLGALREKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQPLVMMIAGVNGAGKTT
SIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARNIDVMMADTAGRLPT
QLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVY
FIGVGEKVEDLQPFSAEEFADALLG
MFSFFKRFKKAPDAAPAEPQQAPDAAGESAAPEAARVDAPAAPVSRGEYSEAPAAERPRSDAPAPVRATPPVSPAAATPE
SPAGQPSAAEAARAPSVVMTVTPAANGRNGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSITNVFVNTKIDDALY
EELETALLMSDAGVDATEHLLGALREKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQPLVMMIAGVNGAGKTT
SIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARNIDVMMADTAGRLPT
QLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVY
FIGVGEKVEDLQPFSAEEFADALLG
Nucleotide
Download Length: 1278 bp
>NTDB_id=1171249 C7S17_RS17540 WP_009902750.1 932207..933484(+) (pilA) [Burkholderia thailandensis strain SBXPR001]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAGCGCCCGACGCCGCACCGGCCGAGCCGCAGCAAGCGCCCGACGCGGCCGG
CGAGTCGGCCGCGCCCGAGGCCGCGCGAGTCGACGCGCCCGCTGCGCCGGTCTCGCGCGGCGAGTACAGCGAAGCGCCGG
CTGCCGAACGGCCCCGTTCCGACGCGCCGGCCCCCGTTCGCGCGACACCGCCCGTCTCTCCCGCAGCAGCGACGCCGGAA
TCGCCGGCCGGGCAGCCGTCCGCCGCCGAAGCGGCGCGCGCGCCGTCCGTCGTGATGACGGTGACGCCGGCCGCCAACGG
CCGCAACGGCGTCGTCGAGACGGTCGAGATCGTGCCGCCGCCCGCGCCCGAGCCGGCCGCGAAGAAATCGTGGATCGCGC
GGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATCACGAACGTGTTCGTCAACACGAAGATCGACGACGCGCTCTAC
GAGGAGCTCGAGACGGCGCTGCTGATGTCCGATGCCGGCGTCGACGCGACCGAGCATCTGCTCGGCGCGCTGCGCGAGAA
GGTGCGCACGGGCCGCCTCACCGATCCGCAACAGGTGAAGGACGCGCTGCGCGGCCTGCTCGTCGAGTTGCTGACGCCGC
TCGAGAAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTCGTGATGATGATCGCGGGCGTGAACGGCGCGGGCAAGACGACG
AGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGATCAATCGGTGCTGCTCGCCGCCGGCGACACGTTCCGCGCGGC
CGCGCGCGAGCAGCTCGCGATCTGGGGCGAGCGCAACAACGTGACCGTCGTCCAGCAGGAAAGCGGCGATCCGGCCGCGG
TGATTTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAACATCGACGTGATGATGGCCGACACCGCGGGCCGCCTGCCGACG
CAGCTGCATCTGATGGAAGAGCTCCGGAAGGTGAAGCGCGTGATCGGCAAGGCACACGACGGCGCGCCGCACGAAGTGCT
GCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCGCGCAGGTGAAGGCCTTCGACGACGCGCTCGGCCTCACGGGCC
TCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGCCAGCGGCCGATTCCGGTGTAC
TTCATCGGCGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGATAA
ATGTTCAGCTTCTTCAAACGATTCAAGAAAGCGCCCGACGCCGCACCGGCCGAGCCGCAGCAAGCGCCCGACGCGGCCGG
CGAGTCGGCCGCGCCCGAGGCCGCGCGAGTCGACGCGCCCGCTGCGCCGGTCTCGCGCGGCGAGTACAGCGAAGCGCCGG
CTGCCGAACGGCCCCGTTCCGACGCGCCGGCCCCCGTTCGCGCGACACCGCCCGTCTCTCCCGCAGCAGCGACGCCGGAA
TCGCCGGCCGGGCAGCCGTCCGCCGCCGAAGCGGCGCGCGCGCCGTCCGTCGTGATGACGGTGACGCCGGCCGCCAACGG
CCGCAACGGCGTCGTCGAGACGGTCGAGATCGTGCCGCCGCCCGCGCCCGAGCCGGCCGCGAAGAAATCGTGGATCGCGC
GGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATCACGAACGTGTTCGTCAACACGAAGATCGACGACGCGCTCTAC
GAGGAGCTCGAGACGGCGCTGCTGATGTCCGATGCCGGCGTCGACGCGACCGAGCATCTGCTCGGCGCGCTGCGCGAGAA
GGTGCGCACGGGCCGCCTCACCGATCCGCAACAGGTGAAGGACGCGCTGCGCGGCCTGCTCGTCGAGTTGCTGACGCCGC
TCGAGAAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTCGTGATGATGATCGCGGGCGTGAACGGCGCGGGCAAGACGACG
AGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGATCAATCGGTGCTGCTCGCCGCCGGCGACACGTTCCGCGCGGC
CGCGCGCGAGCAGCTCGCGATCTGGGGCGAGCGCAACAACGTGACCGTCGTCCAGCAGGAAAGCGGCGATCCGGCCGCGG
TGATTTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAACATCGACGTGATGATGGCCGACACCGCGGGCCGCCTGCCGACG
CAGCTGCATCTGATGGAAGAGCTCCGGAAGGTGAAGCGCGTGATCGGCAAGGCACACGACGGCGCGCCGCACGAAGTGCT
GCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCGCGCAGGTGAAGGCCTTCGACGACGCGCTCGGCCTCACGGGCC
TCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGCCAGCGGCCGATTCCGGTGTAC
TTCATCGGCGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
51.724 |
100 |
0.529 |