Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACOQOS_RS12590 Genome accession   NZ_OZ245041
Coordinates   2893524..2894882 (+) Length   452 a.a.
NCBI ID   WP_420570814.1    Uniprot ID   -
Organism   MAG: Kordia sp. isolate bfdb8b16-a78d-4fcc-957b-55b0cbd6d888     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2888524..2899882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQOS_RS12565 - 2889241..2890050 (-) 810 WP_040560096.1 glycogen/starch synthase -
  ACOQOS_RS12570 panC 2890155..2891003 (+) 849 WP_420570810.1 pantoate--beta-alanine ligase -
  ACOQOS_RS12575 panD 2891031..2891381 (+) 351 WP_420570811.1 aspartate 1-decarboxylase -
  ACOQOS_RS12580 - 2891430..2892344 (+) 915 WP_420570812.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACOQOS_RS12585 - 2892374..2893522 (+) 1149 WP_420570813.1 alpha/beta hydrolase -
  ACOQOS_RS12590 radA 2893524..2894882 (+) 1359 WP_420570814.1 DNA repair protein RadA Machinery gene
  ACOQOS_RS12595 - 2895111..2895857 (+) 747 WP_420570815.1 YoaP domain-containing protein -
  ACOQOS_RS12600 - 2896023..2897057 (-) 1035 WP_420570816.1 NADP(H)-dependent aldo-keto reductase -
  ACOQOS_RS12605 - 2897257..2898018 (-) 762 WP_420570817.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49794.32 Da        Isoelectric Point: 7.6612

>NTDB_id=1171238 ACOQOS_RS12590 WP_420570814.1 2893524..2894882(+) (radA) [MAG: Kordia sp. isolate bfdb8b16-a78d-4fcc-957b-55b0cbd6d888]
MAKVKTSFFCQNCGSQFAKWQGQCSSCKQWNTIVEEVIQKEVKANWQKQEKGVSRTAKPTLIHEISSATEKRLPTSDQEL
DRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERISQKNSNCFVLTETKTQNIFKQV
AEVEPDIVVIDSIQTLHSDYIESSAGSISQIRECTTELIKFAKESGIPVFLIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTSELGIYEMLSDGLREVHNPSEILISKNADELSGTAIAATLEGARPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISIDDTAIDLAVIAAILSSNEDEEISKTNCFAAEIGLAGEI
RPVNRIDQRILEAEKLGFTTFFASKHNKISLKNTKIKVVLISRIEDLVAHLF

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1171238 ACOQOS_RS12590 WP_420570814.1 2893524..2894882(+) (radA) [MAG: Kordia sp. isolate bfdb8b16-a78d-4fcc-957b-55b0cbd6d888]
ATGGCAAAAGTAAAAACATCTTTTTTCTGTCAAAACTGCGGATCACAGTTCGCAAAGTGGCAAGGACAATGTTCTTCTTG
CAAACAATGGAATACAATTGTAGAAGAAGTTATTCAAAAAGAAGTAAAAGCCAACTGGCAAAAACAAGAAAAAGGTGTTT
CTAGAACCGCTAAACCTACCTTAATTCACGAGATAAGTTCTGCTACTGAAAAACGCTTACCTACATCCGATCAAGAATTA
GACAGAGTATTAGGTGGCGGAATTGTACCTGGATCACTTATTTTGCTTGGTGGCGAACCTGGTATCGGAAAGAGTACATT
ATTACTGCAAATTTCACTAAAACTACCCTATAAAACCCTGTACGTTTCAGGAGAGGAAAGTCAGAAGCAAATTAAAATGC
GCGCCGAACGCATCAGTCAGAAAAACTCTAATTGTTTTGTGCTCACAGAAACAAAAACACAAAACATTTTCAAGCAAGTT
GCTGAAGTTGAACCGGATATTGTAGTAATTGATTCCATTCAAACGCTACATTCAGATTATATAGAATCTTCTGCAGGAAG
CATTTCACAAATTCGAGAATGCACTACCGAATTAATCAAGTTTGCTAAAGAAAGTGGAATTCCAGTATTTTTAATTGGGC
ATATTACGAAAGACGGAAATATTGCTGGACCAAAAATCTTGGAACATATGGTAGATACGGTTTTACAGTTTGAAGGTGAT
CGAAACCATGTGTATAGAATTCTTCGTTCACTCAAAAATCGTTTTGGCTCTACTTCTGAATTAGGAATCTACGAAATGCT
ATCAGACGGTTTACGCGAAGTACACAATCCTTCAGAAATTTTGATTTCTAAAAATGCAGATGAACTCAGCGGAACAGCCA
TTGCTGCTACTTTAGAAGGCGCACGGCCTTTAATGATAGAAATTCAAGCATTGGTAAGTACTGCTGTTTACGGAACGCCA
CAACGTAGCACAACTGGTTATAATGCCAAACGTTTAAACATGTTATTAGCTGTCTTAGAAAAGCGTGCAGGTTTTAAACT
AGCTGCAAAAGACGTCTTTTTAAACATTACTGGAGGAATTAGTATTGATGATACAGCCATCGATTTAGCTGTGATAGCTG
CCATTTTATCTAGCAATGAAGATGAAGAAATTTCAAAAACAAATTGTTTTGCCGCAGAAATTGGATTGGCTGGTGAAATT
CGTCCTGTAAACAGAATTGATCAACGCATTTTAGAAGCCGAAAAGTTAGGTTTCACCACATTTTTTGCATCTAAACACAA
CAAGATATCTTTAAAAAATACTAAGATTAAAGTGGTGCTAATTTCACGAATTGAAGATTTGGTAGCACATTTGTTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(64-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.352

100

0.487
  radA Streptococcus mitis NCTC 12261

48.352

100

0.487
  radA Streptococcus pneumoniae Rx1

48.352

100

0.487
  radA Streptococcus pneumoniae R6

48.352

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.352

100

0.487
  radA Streptococcus mitis SK321

48.132

100

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

49.767

95.133

0.473

Multiple sequence alignment