Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACOQOJ_RS12440 Genome accession   NZ_OZ244959
Coordinates   2827643..2829001 (-) Length   452 a.a.
NCBI ID   WP_015753574.1    Uniprot ID   A4CIR0
Organism   MAG: Robiginitalea biformata isolate 550c78ef-ebe4-406e-bcf1-16eaedfeeb33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2822643..2834001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQOJ_RS12420 - 2822834..2824909 (-) 2076 WP_420592846.1 TonB-dependent receptor family protein -
  ACOQOJ_RS12425 - 2825059..2825580 (-) 522 WP_420592847.1 hypothetical protein -
  ACOQOJ_RS12430 - 2825735..2826505 (+) 771 WP_041327495.1 exodeoxyribonuclease III -
  ACOQOJ_RS12435 - 2826520..2827560 (+) 1041 WP_015753573.1 NADP(H)-dependent aldo-keto reductase -
  ACOQOJ_RS12440 radA 2827643..2829001 (-) 1359 WP_015753574.1 DNA repair protein RadA Machinery gene
  ACOQOJ_RS12445 - 2829069..2830214 (-) 1146 WP_272607036.1 alpha/beta hydrolase -
  ACOQOJ_RS12450 - 2830240..2831205 (-) 966 WP_015753576.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACOQOJ_RS12455 panD 2831208..2831558 (-) 351 WP_015753577.1 aspartate 1-decarboxylase -
  ACOQOJ_RS12460 panC 2831572..2832420 (-) 849 WP_420592848.1 pantoate--beta-alanine ligase -
  ACOQOJ_RS12465 - 2832523..2833332 (+) 810 WP_015753579.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48915.39 Da        Isoelectric Point: 7.3088

>NTDB_id=1171200 ACOQOJ_RS12440 WP_015753574.1 2827643..2829001(-) (radA) [MAG: Robiginitalea biformata isolate 550c78ef-ebe4-406e-bcf1-16eaedfeeb33]
MAKTKTAYFCQNCGAQFPKWSGQCNSCKEWNTLAEELLQKPDTRDWKSSEAPARSSKPVRLGEIPTDREMRLSSGDPELD
RVLGGGLVPGSLTLIGGEPGIGKSTLMLQMALKVALRTLYVSGEESQRQIAMRAQRIRPDADSCYILTETNTNRIFKQIT
ALEPELVIVDSIQTLHSDYLEAGAGSVSQIRECTAELIKFAKESHTPVILIGHITKEGSIAGPKILEHMVDTVLQFEGDR
NHLFRIVRALKNRFGNTSELGIYEMKGDGLHGVVNPSEILISRSGESLSGTAVAATVEGLRPLLIEIQALVSTAVYGTPQ
RSATGFPAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGIQVDDPAIDLAVLAAILSSNADIPVPKGVCFAGEIGLAGEIR
PVPRIDQRVGEASKLGFETIYVSANAKISLKTPGIDVRKVAKVEELVRALFD

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1171200 ACOQOJ_RS12440 WP_015753574.1 2827643..2829001(-) (radA) [MAG: Robiginitalea biformata isolate 550c78ef-ebe4-406e-bcf1-16eaedfeeb33]
ATGGCCAAGACCAAAACAGCCTATTTCTGCCAGAATTGCGGCGCCCAGTTCCCCAAGTGGTCCGGGCAGTGCAATTCGTG
CAAAGAGTGGAATACCCTCGCGGAAGAATTGCTCCAGAAGCCCGACACCCGGGACTGGAAATCGTCCGAGGCCCCGGCGC
GTAGTTCAAAACCCGTACGCCTTGGCGAAATCCCCACCGACCGGGAAATGCGGCTTTCCAGCGGCGACCCGGAACTCGAC
CGGGTACTCGGGGGCGGCCTGGTGCCCGGCTCCCTCACGCTGATTGGGGGAGAACCCGGGATCGGCAAGAGCACGCTGAT
GCTGCAAATGGCCCTGAAGGTCGCCCTGCGCACCCTGTATGTCTCCGGGGAGGAAAGCCAGCGGCAAATAGCCATGCGCG
CACAACGCATCCGGCCCGATGCGGATTCCTGCTATATCCTCACCGAGACGAATACCAACCGGATCTTCAAACAAATTACC
GCCCTGGAGCCCGAGCTGGTGATTGTCGATTCCATACAGACCCTGCATTCCGATTACCTGGAGGCCGGGGCGGGCAGTGT
CTCCCAGATCCGGGAGTGCACAGCCGAACTGATCAAATTTGCCAAGGAATCCCATACGCCTGTGATCCTGATTGGCCATA
TCACCAAAGAAGGCAGCATCGCGGGGCCGAAGATCCTCGAGCACATGGTGGACACCGTATTGCAATTCGAAGGGGACCGA
AACCACCTGTTCCGCATTGTCCGCGCCCTGAAAAACCGGTTTGGAAACACTTCCGAACTGGGAATCTATGAAATGAAGGG
CGACGGACTGCACGGGGTGGTGAACCCGTCGGAAATCCTGATTTCCCGATCCGGCGAATCCCTGAGCGGCACGGCCGTGG
CGGCTACCGTCGAAGGGCTCCGGCCGCTGCTGATCGAAATCCAGGCCCTGGTCAGTACGGCGGTCTACGGCACACCCCAG
CGTTCGGCCACCGGGTTCCCGGCCAAGAGGCTGAACATGCTCCTGGCGGTCCTGGAAAAACGAGCCGGCTTCAAGCTGGC
AGCCAAGGATGTCTTTCTGAATATCACCGGGGGGATACAGGTAGACGACCCGGCCATCGACCTGGCCGTGCTGGCGGCTA
TCCTATCGAGCAACGCAGACATCCCGGTGCCCAAAGGGGTGTGTTTTGCGGGGGAAATCGGCCTGGCCGGCGAGATCCGG
CCGGTGCCCCGGATTGACCAGCGCGTGGGGGAGGCTTCCAAGCTCGGTTTCGAGACCATCTATGTGTCCGCCAACGCCAA
GATCTCCCTGAAAACACCGGGGATCGACGTGCGGAAAGTGGCCAAGGTAGAAGAACTCGTCCGGGCGCTTTTCGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

AAA domain (AAA_25)

(71-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4CIR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

100

0.491
  radA Streptococcus pneumoniae Rx1

45.595

100

0.458
  radA Streptococcus pneumoniae D39

45.595

100

0.458
  radA Streptococcus pneumoniae R6

45.595

100

0.458
  radA Streptococcus pneumoniae TIGR4

45.595

100

0.458
  radA Streptococcus mitis NCTC 12261

45.595

100

0.458
  radA Streptococcus mitis SK321

45.595

100

0.458

Multiple sequence alignment