Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACOOFN_RS01225 Genome accession   NZ_OZ244227
Coordinates   262262..263638 (+) Length   458 a.a.
NCBI ID   WP_420432867.1    Uniprot ID   -
Organism   MAG: Hyphobacterium sp. isolate 95e7138b-30c0-4f18-ad8a-671e508b9811     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 257262..268638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOFN_RS01205 rpsF 259248..259601 (+) 354 WP_420432859.1 30S ribosomal protein S6 -
  ACOOFN_RS01210 rpsR 259620..259874 (+) 255 WP_420432861.1 30S ribosomal protein S18 -
  ACOOFN_RS01215 rplI 259886..260539 (+) 654 WP_420432863.1 50S ribosomal protein L9 -
  ACOOFN_RS01220 - 260716..262200 (+) 1485 WP_420432865.1 replicative DNA helicase -
  ACOOFN_RS01225 radA 262262..263638 (+) 1377 WP_420432867.1 DNA repair protein RadA Machinery gene
  ACOOFN_RS01230 - 263642..264256 (+) 615 WP_420432869.1 CvpA family protein -
  ACOOFN_RS01235 purF 264253..265725 (+) 1473 WP_420432871.1 amidophosphoribosyltransferase -
  ACOOFN_RS01240 - 265731..266441 (+) 711 WP_420432873.1 SDR family NAD(P)-dependent oxidoreductase -
  ACOOFN_RS01245 - 266730..267371 (+) 642 WP_420432875.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 47458.07 Da        Isoelectric Point: 5.3535

>NTDB_id=1171074 ACOOFN_RS01225 WP_420432867.1 262262..263638(+) (radA) [MAG: Hyphobacterium sp. isolate 95e7138b-30c0-4f18-ad8a-671e508b9811]
MARGDSQFVCQSCGAVHAKWAGQCSDCGSWNTLVEEVAAAPLGTQAKPRKAGRRGGLELLPLAGESGEPPRHQSGVAEFD
RVCGGGVVPGSALLVGGDPGIGKSTLLLQAVAQLAGSGAKTVYVSGEEAIDQVRSRARRLGLSDRPVALASETSVENILD
GLKSEKPDIAVIDSVQTLWTDQLAAAPGTVAQVRACAQELVRFAKKSGCAIVLVGHVTKDGQIAGPRVVEHMVDAVLYFE
GDRSHQFRILRAVKNRFGPTDEIGVFEMGDAGLREVENPSALFLDDRGDPTPGSAVFAGMEGTRPVLTEIQALVAASPLG
TPRRTVVGWDSGRLSMVLAVLEARCGLSFGGRDVYLNVAGGLKIGEPAADLAVAAAIVSSALDAPIPADAVVFGEISLSG
DIRAVGRNEARLKEAAKLGFAQALAPMSASEGASPVKVRGLAGVTDLVTCISAWRQEE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1171074 ACOOFN_RS01225 WP_420432867.1 262262..263638(+) (radA) [MAG: Hyphobacterium sp. isolate 95e7138b-30c0-4f18-ad8a-671e508b9811]
ATGGCGCGTGGAGACAGCCAGTTCGTTTGCCAGTCCTGCGGGGCGGTCCATGCCAAATGGGCCGGCCAGTGCAGCGATTG
CGGCAGCTGGAACACGCTGGTCGAGGAAGTCGCCGCAGCTCCCCTGGGCACACAGGCCAAACCCCGCAAGGCGGGGCGAA
GAGGCGGGCTGGAATTACTGCCGCTGGCCGGTGAAAGTGGCGAGCCGCCGCGTCATCAAAGCGGCGTCGCCGAGTTCGAC
CGGGTGTGCGGCGGCGGCGTGGTGCCGGGTTCGGCGCTGCTGGTCGGCGGCGATCCCGGGATCGGCAAGTCGACCCTGCT
GCTGCAGGCAGTCGCCCAGCTGGCCGGGTCGGGGGCCAAGACCGTTTACGTGTCGGGTGAGGAAGCGATCGACCAGGTGC
GCAGCCGCGCCCGCCGCCTCGGCCTGTCGGACCGGCCGGTCGCGCTGGCCTCGGAAACCTCGGTTGAAAACATTCTCGAC
GGATTGAAATCGGAAAAGCCGGATATCGCGGTGATCGATTCCGTGCAGACCCTGTGGACCGACCAGCTGGCCGCGGCGCC
CGGCACGGTGGCGCAGGTTCGCGCCTGTGCGCAGGAGCTGGTTCGGTTCGCCAAGAAATCCGGCTGTGCCATTGTCCTTG
TCGGCCATGTGACCAAGGACGGCCAGATCGCCGGGCCGCGCGTGGTCGAGCACATGGTCGACGCGGTCCTTTATTTCGAG
GGCGATCGCAGTCATCAATTCCGCATACTGCGCGCGGTCAAGAACCGGTTCGGACCGACCGACGAGATCGGCGTGTTCGA
AATGGGCGATGCCGGTTTGCGCGAAGTCGAGAACCCCTCTGCTCTGTTCCTCGACGATCGCGGCGATCCGACGCCCGGTT
CCGCCGTTTTTGCCGGCATGGAAGGGACACGCCCGGTCCTCACCGAGATCCAGGCGCTGGTCGCTGCCTCGCCGCTGGGC
ACGCCCCGGCGCACCGTCGTCGGCTGGGATTCCGGCCGGCTTTCCATGGTGCTCGCCGTGCTCGAAGCAAGATGCGGGCT
TTCCTTCGGCGGCCGTGACGTTTATTTGAACGTGGCAGGCGGCTTGAAAATCGGTGAACCGGCCGCGGATCTGGCAGTGG
CAGCAGCAATTGTGTCTTCAGCGCTCGACGCGCCCATTCCCGCCGACGCCGTGGTGTTCGGCGAAATCAGCCTGTCCGGC
GATATCCGCGCCGTCGGCCGTAACGAGGCGCGTCTGAAGGAAGCGGCCAAGCTGGGCTTCGCGCAGGCGCTGGCACCGAT
GTCGGCGAGCGAAGGCGCGTCGCCGGTCAAGGTGCGGGGCCTGGCGGGCGTGACCGATCTGGTCACCTGCATCAGCGCCT
GGCGGCAGGAGGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(86-222)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

99.563

0.491
  radA Streptococcus mitis NCTC 12261

46.593

99.345

0.463
  radA Streptococcus pneumoniae Rx1

46.374

99.345

0.461
  radA Streptococcus pneumoniae TIGR4

46.374

99.345

0.461
  radA Streptococcus pneumoniae D39

46.374

99.345

0.461
  radA Streptococcus pneumoniae R6

46.374

99.345

0.461
  radA Streptococcus mitis SK321

45.474

100

0.461

Multiple sequence alignment