Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACOOEY_RS10960 Genome accession   NZ_OZ244204
Coordinates   2447509..2448882 (+) Length   457 a.a.
NCBI ID   WP_420384753.1    Uniprot ID   -
Organism   MAG: Roseivirga sp. isolate 0384a914-f8a8-4946-b0f3-57d7807c8a47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2442509..2453882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOEY_RS10945 rbfA 2442895..2443272 (+) 378 WP_420384750.1 30S ribosome-binding factor RbfA -
  ACOOEY_RS10950 - 2443269..2444495 (+) 1227 WP_420384751.1 ABC transporter permease -
  ACOOEY_RS10955 - 2444568..2447504 (+) 2937 WP_420384752.1 DEAD/DEAH box helicase -
  ACOOEY_RS10960 radA 2447509..2448882 (+) 1374 WP_420384753.1 DNA repair protein RadA Machinery gene
  ACOOEY_RS10965 - 2448879..2449778 (-) 900 WP_420384754.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  ACOOEY_RS10970 - 2449844..2450851 (+) 1008 WP_420384755.1 RluA family pseudouridine synthase -
  ACOOEY_RS10975 trhA 2450863..2451513 (-) 651 WP_420384756.1 PAQR family membrane homeostasis protein TrhA -
  ACOOEY_RS10980 - 2451510..2452310 (-) 801 WP_420384757.1 ion transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50263.60 Da        Isoelectric Point: 7.5984

>NTDB_id=1171061 ACOOEY_RS10960 WP_420384753.1 2447509..2448882(+) (radA) [MAG: Roseivirga sp. isolate 0384a914-f8a8-4946-b0f3-57d7807c8a47]
MAKTKSVYVCQNCGANSAKWIGKCPSCNEWNTYTEEVISKDKSSEASWREESGTKVRQKPINIREIEKSSEERLVTYDKE
LNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLALAARKKRVLYVSGEESQQQLKMRAERIGIQTDQCFVLSETNTQNIFS
QIKNVKPDLLIVDSIQTLHTDRIESAAGSVSQVRECTGELMKFAKETQTPVFLIGHITKEGSIAGPKVLEHMVDTVLQFE
GDRHLSYRILRTVKNRFGSTSELGIYEMQTEGLRQVSNPSEILISQKADDLTGIAIGATIEGNRPLLIEIQSLVSSATYG
TPQRSSTGFDAKRLNMLLAVLEKRGGLRFGTQDVFLNVAGGIRIDEPALDLAVCASLVSAYHDIPISDKVAFAAEVGLGG
EIRAVNRIESRIAEAEKLGFQEIYISKFNTKGLDLKSKNVTIKPFAKLREVFEDLMG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1171061 ACOOEY_RS10960 WP_420384753.1 2447509..2448882(+) (radA) [MAG: Roseivirga sp. isolate 0384a914-f8a8-4946-b0f3-57d7807c8a47]
ATGGCTAAAACCAAATCCGTATATGTCTGTCAGAATTGTGGAGCTAATTCAGCCAAGTGGATTGGCAAGTGCCCCTCATG
TAATGAGTGGAATACCTATACGGAAGAGGTAATCTCAAAAGACAAATCATCAGAAGCCTCGTGGCGCGAAGAATCCGGCA
CTAAAGTCCGGCAGAAGCCGATCAATATTCGGGAGATTGAAAAAAGCTCTGAAGAAAGGCTGGTCACTTACGACAAAGAG
TTGAACCGGGTATTAGGTGGAGGAATTGTGGCAGGCTCGTTAGTGCTGATCGGTGGAGAACCAGGTATTGGTAAATCGAC
ACTTATGCTGCAGTTAGCTCTGGCTGCCAGAAAGAAAAGAGTACTTTATGTCAGTGGGGAAGAGAGTCAGCAGCAACTTA
AAATGAGGGCCGAGAGAATTGGTATTCAAACCGACCAATGCTTTGTACTTTCCGAGACTAATACACAAAACATCTTCTCA
CAGATTAAAAATGTAAAGCCTGATTTACTTATAGTTGATTCTATCCAGACTTTACACACAGATAGAATAGAAAGTGCTGC
CGGTTCAGTTTCTCAGGTAAGAGAGTGCACCGGTGAGTTGATGAAGTTTGCCAAAGAGACACAAACTCCGGTATTTTTAA
TTGGTCATATCACTAAAGAAGGCAGTATTGCCGGACCGAAAGTATTGGAGCATATGGTAGACACAGTGCTTCAGTTCGAA
GGAGATCGTCACTTATCCTATCGAATTCTCAGGACTGTTAAGAACAGATTTGGATCTACTTCAGAACTGGGTATTTACGA
GATGCAGACAGAAGGTTTAAGGCAGGTTTCCAACCCATCCGAAATTTTGATCTCGCAAAAGGCGGATGACTTGACGGGAA
TTGCTATTGGGGCAACCATTGAAGGAAACAGACCACTATTGATAGAAATACAATCTCTTGTCAGCTCTGCCACCTATGGC
ACTCCCCAGCGTAGTTCGACCGGCTTCGATGCGAAGAGGCTGAATATGCTACTGGCTGTGCTCGAAAAAAGAGGAGGACT
GAGGTTTGGCACTCAAGACGTCTTTTTGAATGTTGCAGGAGGTATCAGAATAGATGAGCCGGCACTTGATTTGGCAGTGT
GTGCTTCTCTTGTTAGCGCTTATCATGATATTCCTATTTCAGATAAGGTGGCTTTTGCCGCAGAAGTAGGTTTGGGTGGA
GAAATTCGTGCGGTTAACCGTATTGAAAGTAGAATTGCTGAAGCCGAGAAACTTGGTTTTCAGGAAATTTACATCTCTAA
ATTCAATACCAAAGGACTCGACCTGAAGAGTAAGAATGTGACTATTAAACCTTTCGCTAAGCTTAGGGAAGTGTTTGAGG
ATCTTATGGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.505

100

0.527
  radA Streptococcus pneumoniae Rx1

48.908

100

0.49
  radA Streptococcus pneumoniae D39

48.908

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.908

100

0.49
  radA Streptococcus pneumoniae R6

48.908

100

0.49
  radA Streptococcus mitis NCTC 12261

48.69

100

0.488
  radA Streptococcus mitis SK321

50.575

95.186

0.481

Multiple sequence alignment