Detailed information NTG1170828

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACOFKU_RS12380
• Genome accession: NZ_OZ241361
• Coordinates: 2694719..2696041 (+)
• Length: 440 a.a.
• NCBI ID: WP_419812498.1
• Uniprot ID: -
• Organism: MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2689719..2701041

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOFKU_RS12365	pbpC	2690977..2693310 (+)	2334	WP_419812495.1	penicillin-binding protein 1C	-
ACOFKU_RS12370	rsmD	2693322..2693873 (-)	552	WP_419812496.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ACOFKU_RS12375	-	2693883..2694611 (-)	729	WP_419812497.1	hypothetical protein	-
ACOFKU_RS12380	pilA	2694719..2696041 (+)	1323	WP_419812498.1	signal recognition particle-docking protein FtsY	Machinery gene
ACOFKU_RS12385	ftsE	2696107..2696805 (+)	699	WP_419813673.1	cell division ATP-binding protein FtsE	-
ACOFKU_RS12390	ftsX	2696792..2697790 (+)	999	WP_419812499.1	permease-like cell division protein FtsX	-
ACOFKU_RS12395	-	2697905..2699164 (+)	1260	WP_419812500.1	hypothetical protein	-
ACOFKU_RS12400	rpoH	2699400..2700272 (+)	873	WP_419812501.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 440 a.a.
• Molecular weight: 48067.17 Da
• Isoelectric Point: 4.2604

>NTDB_id=1170828 ACOFKU_RS12380 WP_419812498.1 2694719..2696041(+) (pilA) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
MFNFFKRKKNAPEAQKPAEDQVVETQDQTQEQAQELVQEQAQKPAESAVDHAAEIETAVQAVEEVVAEEQALTQPDVERE
TAEQEKAEPVVEAVAAPTPESTPEPEPKAEENSEALTFFEEATEQQAPKEEKKKGLFGRIRAGLSKTRSGLVDGLADLLV
GKKEIDDDLLEDLETQLIMADVGMEATQEIMERLTGRISRKELSDSDALFEALIEELRTMLDVAQQPLVVDSEKSPYVIL
MVGINGVGKTTTIGKLAKQFQNAGKSVMLAAGDTFRAAAVEQLQVWGERNDVPVVAQHTGADSASVIFDAVEAAKSRNVD
ILIADTAGRLHTKDNLMQELEKVVRVMKKLDDTAPHEVMLVLDAGTGQNAINQCKQFLQAVGVTGLTLTKLDGTAKGGII
FALAKQFEIPVRFIGVGESIDDLRPFNADEFTRALFKQDD

Nucleotide

• Length: 1323 bp

>NTDB_id=1170828 ACOFKU_RS12380 WP_419812498.1 2694719..2696041(+) (pilA) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
ATGTTTAATTTTTTTAAGCGCAAAAAAAACGCGCCAGAAGCGCAAAAACCTGCTGAAGATCAGGTGGTCGAGACTCAAGA
CCAAACCCAGGAACAAGCCCAGGAGCTAGTTCAAGAACAGGCTCAGAAACCAGCGGAATCCGCTGTTGATCATGCCGCTG
AGATTGAAACAGCCGTGCAGGCCGTGGAAGAGGTTGTGGCCGAAGAGCAGGCACTCACTCAGCCTGACGTTGAACGGGAA
ACAGCTGAACAGGAAAAAGCTGAGCCGGTTGTCGAAGCCGTTGCCGCCCCCACTCCTGAATCAACTCCAGAACCAGAACC
CAAAGCCGAAGAGAACAGCGAAGCGCTGACCTTCTTTGAAGAAGCCACTGAGCAACAAGCACCGAAAGAAGAGAAGAAAA
AAGGCTTGTTTGGCCGTATCCGTGCTGGCCTGAGCAAAACCCGCAGCGGTTTGGTGGATGGTTTGGCTGACCTGTTGGTG
GGTAAGAAAGAGATTGATGATGACCTGCTGGAAGACCTCGAAACTCAGCTGATTATGGCCGACGTGGGCATGGAAGCGAC
GCAGGAAATTATGGAGCGCTTAACCGGCCGAATTTCCCGTAAAGAGTTAAGCGATTCTGATGCTCTGTTTGAAGCATTAA
TCGAAGAGCTGCGCACTATGCTGGATGTCGCTCAGCAGCCTCTGGTGGTGGACAGCGAAAAGTCACCGTACGTGATTCTG
ATGGTGGGCATTAACGGTGTGGGTAAAACCACCACCATCGGTAAGCTGGCGAAGCAATTCCAGAATGCCGGCAAGAGTGT
GATGTTGGCTGCTGGTGATACCTTCCGGGCAGCGGCGGTTGAGCAGTTGCAGGTTTGGGGTGAACGTAACGATGTGCCCG
TGGTGGCGCAGCATACCGGGGCGGATTCCGCTTCGGTGATTTTTGATGCGGTGGAAGCGGCTAAGTCCCGTAATGTGGAT
ATTCTGATTGCTGATACCGCAGGTCGTCTGCACACCAAAGACAACCTGATGCAGGAACTGGAAAAAGTTGTACGAGTGAT
GAAAAAACTCGACGACACCGCGCCACACGAAGTGATGCTGGTACTGGATGCCGGTACCGGACAAAACGCTATCAACCAGT
GTAAGCAGTTCTTGCAGGCGGTGGGTGTCACCGGCCTGACGTTAACCAAGCTGGACGGTACCGCCAAAGGTGGCATTATC
TTCGCACTGGCGAAGCAGTTTGAGATCCCGGTACGCTTTATTGGCGTGGGTGAAAGCATCGACGATTTACGTCCGTTTAA
TGCCGATGAATTTACCCGGGCACTGTTCAAGCAGGACGATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (152-217)

• SRP54-type protein, GTPase domain (SRP54) (237-436)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.869	100	0.491