Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACOFKY_RS18220 Genome accession   NZ_OZ241355
Coordinates   3948973..3951198 (-) Length   741 a.a.
NCBI ID   WP_419819889.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3943973..3956198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS18200 - 3944146..3944484 (-) 339 WP_004725521.1 chaperone modulator CbpM -
  ACOFKY_RS18205 - 3944526..3945494 (-) 969 WP_419819886.1 DnaJ C-terminal domain-containing protein -
  ACOFKY_RS18210 - 3945839..3946714 (-) 876 WP_419819887.1 Hsp33 family molecular chaperone HslO -
  ACOFKY_RS18215 - 3946798..3948693 (-) 1896 WP_419819888.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACOFKY_RS18220 priA 3948973..3951198 (-) 2226 WP_419819889.1 primosomal protein N' Machinery gene
  ACOFKY_RS18225 gspF 3951367..3952572 (+) 1206 WP_336953726.1 type II secretion system inner membrane protein GspF -
  ACOFKY_RS18230 gspG 3952612..3953049 (+) 438 WP_004816754.1 type II secretion system major pseudopilin GspG -
  ACOFKY_RS18235 - 3953331..3953666 (+) 336 WP_336953727.1 hypothetical protein -
  ACOFKY_RS18240 - 3953741..3954004 (-) 264 WP_034617824.1 DUF2798 domain-containing protein -
  ACOFKY_RS18245 - 3954354..3954692 (+) 339 WP_336953728.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84275.57 Da        Isoelectric Point: 8.7880

>NTDB_id=1170799 ACOFKY_RS18220 WP_419819889.1 3948973..3951198(-) (priA) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MSNTLATPQTIYRIQVAVPVYLNDCFDYQVTAEQYAQAEVGARVAVSFGRQNLIGVIVKKVPIDEPVDSHFKLKAITELL
DEQAILDSKVLSLLTWSSQYYQFPIGEVIQTALPTLLRQGKPYNLLARIWKLLDLHAEDKVKRSEKQQEAYKILKLHPKG
TQENILNLSGVETATLKVLEKKDIVRCDLEPQNVTPEPVQLAQMPLTPNDDQKKAIQAILKAQKKYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDTKRLQAWQHAQTGKASIILGTRSAIYTPL
PQLGLIILDEEHDLSFKQQEGFRYHARDVAMYRAHLENCPIILGSATPSIDSYYLARQEKLTRIELNQRAGAAIMPKMHL
IDLKVAKKQHGLSDVLIAEIKKRLEKKEQVLIFLNRRGYAPVLICESCGWQANCPNCDAHFTLHLKPYQHLHCHHCGTIN
RMPDACPQCNQQQLKPIGMGTAKVEETLNELFPHFPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDFRATEHTAQLIIQVAGRAGRGEMKGEVYLQTLRPDHPLLNTLIHNDYRTFAKQTLKDRQAAQL
PPFRYTALIRCDSKHQEENLKFLTEMTQLLRQTAEDNLIDIWGPIPAPMERKAGRYQAHVVLLSQDRAKMHFYIRQWWQQ
LLHSKPSTMKITIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1170799 ACOFKY_RS18220 WP_419819889.1 3948973..3951198(-) (priA) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGTCGAATACCCTTGCTACGCCACAGACGATTTATCGTATTCAAGTTGCTGTTCCAGTCTATTTGAATGACTGCTTTGA
TTACCAAGTCACCGCTGAACAATATGCGCAAGCTGAAGTCGGTGCGCGTGTTGCAGTGTCTTTTGGCAGACAGAATCTGA
TTGGTGTTATTGTCAAGAAAGTACCGATTGATGAACCTGTGGATTCCCATTTTAAACTCAAAGCCATTACTGAACTGTTA
GATGAACAGGCCATTCTAGACAGTAAAGTTTTAAGTTTATTGACATGGTCATCACAATATTATCAATTTCCTATCGGTGA
AGTGATTCAAACGGCGTTACCTACCTTATTACGCCAAGGGAAACCTTATAATTTATTGGCACGTATCTGGAAACTTTTAG
ACTTACATGCCGAAGACAAAGTTAAGCGTTCTGAAAAACAACAAGAAGCCTATAAAATTTTAAAGCTACACCCGAAAGGG
ACACAGGAAAATATTCTTAATCTAAGTGGTGTTGAAACAGCCACACTCAAAGTCCTTGAGAAAAAAGACATTGTTCGTTG
TGATTTAGAACCACAAAATGTCACGCCAGAACCGGTGCAATTGGCACAGATGCCCCTCACGCCAAATGACGATCAGAAGA
AAGCCATTCAAGCGATTTTAAAAGCGCAGAAAAAATATCAAGCGTTTCTACTGGATGGTTTAACTGGGAGTGGTAAAACC
GAAGTTTATTTGCAAGTGATGCATGAAGTACTTAAACAAGGCAAACAAGTCTTGGTTTTAGTGCCTGAAATCGGCTTAAC
CCCACAAACCATCAGCCGTTTTCAATCACGTTTTCATTGCAATATTGCCTTACTGCACTCAGGCTTAAATGACACTAAAC
GTTTACAAGCATGGCAGCATGCGCAAACGGGCAAAGCCTCTATTATTTTAGGCACACGTTCTGCAATTTATACACCTTTG
CCACAGTTGGGTTTGATTATTTTAGATGAAGAGCATGATCTTTCGTTTAAACAACAAGAAGGCTTTCGCTATCATGCTCG
CGATGTGGCCATGTATCGTGCACATTTAGAAAATTGCCCGATTATCTTAGGTTCGGCCACGCCTAGTATTGACAGTTATT
ATCTTGCTCGCCAAGAAAAGCTGACACGGATTGAATTAAATCAACGTGCTGGTGCCGCAATCATGCCGAAAATGCATTTG
ATTGATTTAAAAGTGGCAAAAAAACAGCATGGCTTAAGTGATGTTTTGATTGCTGAAATCAAAAAACGTTTAGAGAAAAA
AGAACAAGTTCTGATTTTTTTAAATCGCCGCGGTTATGCCCCTGTGCTTATCTGTGAAAGCTGTGGTTGGCAGGCCAATT
GCCCCAACTGCGATGCTCACTTTACCCTGCATTTAAAGCCTTATCAGCATTTGCACTGTCACCATTGTGGCACGATTAAT
CGTATGCCTGATGCTTGCCCTCAATGCAATCAACAACAATTAAAGCCAATTGGCATGGGAACTGCCAAAGTTGAAGAAAC
CTTGAATGAGCTGTTCCCTCACTTCCCCGTCTTGCGCGTAGATCGTGACTCAACTAGTCGGGTTGGTAGTTGGCAAAAGA
TTTATGATCAAATCCAAAAAAGTGAACCGACTATTTTACTTGGCACGCAGATGCTGGCAAAAGGACATCACTTTCCTTAT
GTCACCTTAGTGGCAATTTTGGATATCGATGCAGGTTTGTTGAGTGTAGATTTCCGTGCTACAGAACATACTGCGCAATT
AATTATTCAAGTTGCAGGTCGTGCGGGTCGTGGTGAAATGAAGGGTGAAGTCTATTTACAAACCCTAAGACCTGATCATC
CTTTATTAAACACCTTGATTCATAATGACTATCGGACCTTTGCTAAACAAACTTTAAAAGATCGCCAAGCCGCACAGCTT
CCACCCTTTCGTTATACAGCTTTGATTCGCTGTGATTCAAAGCATCAGGAAGAAAATTTAAAGTTTCTGACTGAAATGAC
GCAGCTCCTTAGACAAACTGCCGAAGATAATTTAATTGATATTTGGGGACCGATTCCAGCGCCAATGGAGCGTAAAGCAG
GACGTTACCAAGCTCATGTGGTTTTGCTTTCTCAAGATCGGGCAAAAATGCATTTTTATATTCGTCAATGGTGGCAACAG
CTGTTACATAGCAAACCCTCTACGATGAAAATAACCATAGATGTTGATCCGCAAGAATTGAGTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.14

100

0.723

Multiple sequence alignment