Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACOFKY_RS14585 Genome accession   NZ_OZ241355
Coordinates   3159084..3159515 (-) Length   143 a.a.
NCBI ID   WP_419359059.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3154084..3164515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS14550 - 3154360..3154530 (+) 171 WP_419819681.1 hypothetical protein -
  ACOFKY_RS14555 - 3154568..3155712 (+) 1145 WP_085944219.1 IS3 family transposase -
  ACOFKY_RS14560 - 3155769..3156611 (+) 843 Protein_2864 lipase family alpha/beta hydrolase -
  ACOFKY_RS14565 rplS 3156676..3157047 (-) 372 WP_234623337.1 50S ribosomal protein L19 -
  ACOFKY_RS14570 trmD 3157322..3158062 (-) 741 WP_336952280.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACOFKY_RS14575 rimM 3158105..3158653 (-) 549 WP_336952281.1 ribosome maturation factor RimM -
  ACOFKY_RS14580 rpsP 3158681..3158938 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  ACOFKY_RS14585 comF 3159084..3159515 (-) 432 WP_419359059.1 type IV pilin protein Machinery gene
  ACOFKY_RS14590 - 3159518..3160051 (-) 534 WP_336952283.1 type IV pilin protein -
  ACOFKY_RS14595 pilY1 3160029..3163886 (-) 3858 WP_419820735.1 pilus assembly protein PilY Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15665.75 Da        Isoelectric Point: 7.7659

>NTDB_id=1170778 ACOFKY_RS14585 WP_419359059.1 3159084..3159515(-) (comF) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MMKSKGFTLVELLIVVAIIGILAAIAYPSYQEYIVRTNRVDAQSEMLQIARNLSNYKMAKGTYKDAKLENGAFEEDYPST
GATKYKVKLEIPTDNLTWSLTATPISGSQQDGNGDIGLNSQGQKCWTKGSTCTPSATTNWDGR

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1170778 ACOFKY_RS14585 WP_419359059.1 3159084..3159515(-) (comF) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATTATGAAATCAAAAGGTTTTACATTAGTTGAGCTATTAATTGTTGTTGCAATTATAGGAATTTTAGCTGCAATCGCTTA
TCCGTCATATCAAGAATATATTGTTCGAACAAATCGAGTTGATGCACAAAGTGAAATGCTTCAGATTGCTCGAAATTTAT
CCAATTATAAAATGGCGAAAGGCACATATAAAGATGCGAAATTGGAAAACGGAGCATTTGAAGAAGATTATCCGAGTACA
GGAGCGACAAAATACAAAGTTAAGTTAGAAATTCCTACAGATAATTTAACATGGTCTTTAACGGCTACCCCAATTTCTGG
TTCACAACAAGATGGGAATGGGGATATCGGATTAAATAGCCAAGGGCAGAAATGTTGGACCAAAGGCTCAACCTGCACCC
CATCAGCAACTACAAATTGGGATGGCAGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

51.389

100

0.517
  pilE Acinetobacter baumannii D1279779

45.985

95.804

0.441

Multiple sequence alignment