Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   ACNALX_RS04830 Genome accession   NZ_OZ223211
Coordinates   421433..424819 (-) Length   1128 a.a.
NCBI ID   WP_415720150.1    Uniprot ID   -
Organism   MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 416433..429819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNALX_RS04810 - 416961..417986 (-) 1026 WP_047886421.1 ABC transporter permease -
  ACNALX_RS04815 - 417989..418975 (-) 987 WP_047886422.1 ABC transporter permease -
  ACNALX_RS04820 - 419114..420796 (-) 1683 WP_273858506.1 ABC transporter substrate-binding protein -
  ACNALX_RS04825 - 421150..421440 (+) 291 WP_415720149.1 hypothetical protein -
  ACNALX_RS04830 chiS 421433..424819 (-) 3387 WP_415720150.1 response regulator Regulator
  ACNALX_RS04835 rsmC 425134..426156 (-) 1023 WP_415720151.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  ACNALX_RS04840 - 426318..427403 (-) 1086 WP_047886426.1 AI-2E family transporter -
  ACNALX_RS04845 hemL 427760..429055 (-) 1296 WP_047886427.1 glutamate-1-semialdehyde 2,1-aminomutase -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 126877.92 Da        Isoelectric Point: 6.0402

>NTDB_id=1170635 ACNALX_RS04830 WP_415720150.1 421433..424819(-) (chiS) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
MQKTTRFKRLQHTLMLAFLVLSITPLLLSALFFLRSHTTDLAEQSTNHLASLLDNKRKQLESFITARESEVQSFARSELA
NASGGRFYGLVGAYNQLGDISGQLQELGRSTYFTERLTMRAPAENGVTNYASHERYRLMYKRYNWAFDEYLKRSHFSDIL
LVDLQGNIVYSANSPETFSVNLQQTTHTFQALSTTFTAISTLTRQSGHSADQVPVVFTDFSAEPDHPDLAAWFAAPIIQQ
GYLHSYVFFKLSNRSIRDILSDTVATTNHQVQTLLVGQDHRSLLPQSTQAPATYSSPSIDQALAGNSGVGSFANFSGVPV
LSAFAPISLKGSEWALVVELPEKEAFARIRQLEKIFFAAMLTAVVLVIIASHWLSNSITAPLLRLTWAAERVSAGDLDQK
IGSTERSDEIGRLATSFARMQSSIRDKITLIREQNTELEQNLLVIRQKNNELQTADKLKDEFLATTSHELRTPLHGMVGI
AESLLAGANGPLQHSQRRQLEIIINSGQRLTNLVDDLLDYHKMRYGDLDIQRHAVDLASAVRLVLELSSHLLGNKPIRII
NQIPDDLPLVLGDEQRIEQVLYNLVGNAIKYTSEGKIILSATILQKQLRIQVVDTGQGIPAEQLEHIFEPLTQANTQSAH
YRQGSGLGLSISRQLVDLMGGRLYVSSQPMIGTTFSFTLNLASEHDIANSQLANRNLHFQAPISDPTVCELEDLPDNPDG
DLLLVVDDEPVNLQVLHNFLRLEGYRVITAESGQQALQLVDEQQPALVLLDIMMPEMSGYEVCEQLRKTYSMLDLPIIML
SALGQVQDRVRGFESGANDYLTKPFNKEELTARIGAHLKAGQTERQRLENQILAEEVARRKETEAGLLETQSRLLGLLES
TNEAILCVRNDGLIRYANSAAGKLFERTPEQLERHNLYDILATHLPEDIASRHHFHGKLMFRIGDGLSSLSTDVINLPEA
SGLQRMFIFDNHGPTEEHRIKVLENAVDVLSGFAFNRDRHSLDQLRHLGEEFSELADRLDDKGGSKHDTLRELLVDTMKT
TLGAWERYTRKTKFELAEESGLWRVYLDRSTLQTRTLDKYLHLETLPKTPRWRTVLSTVDFVLERCQVPADEREQLQLMR
QQLQHLIS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=1170635 ACNALX_RS04830 WP_415720150.1 421433..424819(-) (chiS) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
ATGCAGAAGACTACCCGTTTCAAGCGACTGCAGCATACCCTAATGCTGGCATTTCTCGTTCTCAGTATCACTCCCCTGCT
CCTCTCAGCATTATTTTTCCTTCGCTCCCACACCACTGATTTAGCAGAGCAAAGTACCAATCACCTGGCGTCATTGCTCG
ACAACAAACGCAAGCAGCTGGAGAGCTTCATTACGGCACGGGAATCGGAAGTGCAGAGCTTTGCCCGCTCTGAGCTGGCC
AATGCCAGTGGCGGACGGTTCTACGGCCTGGTCGGTGCTTATAACCAACTGGGTGACATCAGCGGGCAATTGCAGGAACT
CGGTCGCAGCACATATTTTACGGAGCGGCTGACCATGAGGGCGCCGGCTGAGAACGGAGTCACGAATTACGCCAGCCATG
AACGATACCGGCTGATGTACAAACGCTATAACTGGGCTTTCGACGAATACCTTAAGCGGTCGCATTTCAGCGACATTCTG
CTGGTCGACTTACAGGGCAATATTGTCTATTCCGCCAACAGTCCCGAGACATTCAGCGTCAACCTGCAGCAAACCACCCA
CACGTTTCAGGCACTGAGCACTACTTTTACCGCGATTTCGACCCTCACCCGGCAATCCGGCCACAGCGCGGATCAGGTTC
CGGTCGTATTCACGGATTTCAGTGCTGAGCCAGATCACCCGGATCTCGCCGCCTGGTTTGCCGCCCCCATCATTCAGCAA
GGCTATCTGCACAGTTATGTCTTTTTTAAGCTAAGTAACCGCTCCATCCGGGACATTCTCAGCGACACCGTGGCCACAAC
CAATCATCAGGTGCAGACCCTGTTGGTAGGCCAGGATCACCGCTCATTGCTGCCGCAAAGTACTCAGGCCCCCGCGACCT
ATTCCAGCCCGAGCATCGATCAGGCACTGGCCGGCAACAGCGGCGTGGGCAGCTTTGCCAACTTCAGCGGGGTGCCGGTA
CTGAGCGCCTTCGCCCCCATCAGCCTCAAGGGCAGTGAGTGGGCGCTGGTCGTCGAGCTGCCAGAAAAAGAAGCCTTCGC
CCGCATTCGCCAGCTGGAAAAAATCTTCTTTGCGGCCATGCTGACGGCCGTGGTGCTGGTGATTATCGCTTCGCACTGGC
TCTCCAACTCCATCACCGCGCCTTTGCTGCGCCTGACCTGGGCCGCTGAGCGGGTATCCGCCGGGGATCTGGATCAGAAG
ATAGGAAGCACCGAGCGCAGCGACGAAATCGGCCGCCTGGCCACCAGCTTTGCCCGCATGCAATCTTCCATTCGGGATAA
AATCACCCTGATCCGCGAACAAAACACGGAGCTGGAGCAAAACCTGCTGGTGATACGGCAGAAGAACAACGAGCTGCAGA
CCGCTGATAAACTGAAAGATGAGTTTCTGGCCACCACATCCCATGAACTGCGGACCCCGCTGCACGGGATGGTCGGCATC
GCCGAATCGCTGCTGGCCGGTGCCAACGGCCCGTTACAACATTCGCAACGACGCCAGCTGGAGATCATCATCAATAGCGG
CCAGCGCCTGACCAACCTGGTCGATGATCTGCTGGATTATCATAAGATGCGTTATGGCGATCTTGATATACAGCGCCATG
CGGTAGATCTGGCCTCGGCCGTGCGTCTGGTACTGGAACTGTCCAGCCACCTGCTGGGCAACAAGCCGATCCGCATCATC
AACCAGATCCCTGATGACCTGCCGCTGGTGCTGGGCGATGAGCAGCGTATCGAGCAGGTACTGTACAACCTGGTCGGTAA
CGCCATCAAATACACCTCTGAAGGTAAGATCATCCTTTCAGCCACGATTTTGCAAAAGCAGCTTCGGATTCAGGTCGTAG
ATACCGGCCAGGGGATCCCTGCCGAGCAGCTGGAGCATATCTTTGAGCCGCTGACCCAGGCCAATACGCAATCCGCCCAT
TACCGCCAGGGCTCCGGACTGGGGCTGTCCATTAGCCGCCAGCTGGTGGATTTAATGGGGGGACGCCTGTACGTCAGCAG
CCAACCGATGATAGGCACTACGTTCAGCTTCACCCTGAACCTGGCCAGCGAGCATGACATTGCTAACAGTCAGTTGGCCA
ACCGCAACCTTCACTTTCAGGCTCCGATCAGCGACCCAACGGTGTGTGAGCTGGAAGATTTACCGGATAATCCGGATGGC
GACCTGTTGCTGGTCGTGGATGATGAACCGGTCAACCTGCAAGTTCTGCATAACTTCCTGCGACTGGAAGGGTATCGGGT
GATCACTGCAGAAAGTGGCCAGCAGGCGCTTCAGCTGGTTGATGAACAACAGCCCGCACTGGTGTTGCTGGATATTATGA
TGCCGGAGATGTCCGGCTATGAAGTCTGTGAGCAACTGCGGAAAACCTACAGCATGCTGGATTTACCCATCATCATGCTT
TCTGCCCTGGGACAGGTTCAGGATCGGGTACGCGGCTTTGAATCCGGTGCCAACGATTACCTGACCAAGCCATTCAATAA
AGAAGAGCTGACCGCCCGGATCGGGGCACACCTGAAAGCTGGACAAACTGAACGCCAGCGCCTGGAAAATCAGATCTTGG
CCGAAGAAGTGGCACGGCGAAAAGAAACGGAAGCGGGCCTGCTGGAAACCCAGAGCCGCCTGCTTGGGCTGCTCGAATCC
ACCAATGAAGCGATACTCTGTGTCCGTAACGACGGCCTTATACGCTATGCCAACAGCGCCGCCGGTAAACTGTTTGAACG
CACTCCTGAGCAACTGGAGCGCCACAACCTTTACGATATTCTGGCCACTCATCTGCCGGAAGACATCGCCAGCCGCCACC
ATTTCCACGGCAAGCTGATGTTCCGCATCGGGGATGGCCTCAGTTCCCTGAGCACTGACGTGATTAACCTGCCGGAAGCC
TCCGGGTTACAGCGGATGTTTATTTTTGACAACCACGGTCCGACTGAAGAGCACCGTATCAAAGTGCTGGAAAATGCCGT
CGACGTTTTATCCGGCTTTGCCTTCAACCGTGACCGACACAGCTTGGACCAACTCCGTCATCTGGGCGAGGAATTCAGCG
AACTGGCGGATCGCCTGGATGACAAAGGCGGCAGCAAGCACGACACCCTGCGCGAACTGCTGGTCGATACCATGAAGACC
ACCCTTGGCGCCTGGGAACGCTATACCAGGAAAACCAAATTTGAACTGGCCGAAGAAAGCGGGCTCTGGCGGGTCTACCT
CGACCGCAGTACCCTGCAAACCCGGACACTGGATAAATACCTGCACCTTGAAACTCTGCCCAAAACACCGCGCTGGCGCA
CGGTACTCAGCACCGTGGATTTTGTGCTGGAACGCTGTCAGGTGCCCGCCGATGAAAGAGAACAACTGCAACTGATGAGG
CAGCAACTGCAACACCTTATCAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(724-834)

HAMP domain (HAMP)

(373-426)

His Kinase A (phospho-acceptor) domain (HisKA)

(459-524)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(572-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

57.345

100

0.574

Multiple sequence alignment