Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMTA2_RS23915 Genome accession   NZ_OZ221631
Coordinates   5475928..5476563 (-) Length   211 a.a.
NCBI ID   WP_413795711.1    Uniprot ID   -
Organism   Pseudomonas sp. N4 isolate ena-SAMPLE-TAB-27-01-2025-11:39:45:924-2052     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5470928..5481563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMTA2_RS23880 - 5471293..5471763 (-) 471 WP_413792045.1 (2Fe-2S)-binding protein -
  ACMTA2_RS23885 murB 5472044..5473063 (-) 1020 WP_413792046.1 UDP-N-acetylmuramate dehydrogenase -
  ACMTA2_RS23890 - 5473060..5473524 (-) 465 WP_413792047.1 low molecular weight protein-tyrosine-phosphatase -
  ACMTA2_RS23895 kdsB 5473524..5474288 (-) 765 WP_413792048.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMTA2_RS23900 - 5474285..5474470 (-) 186 WP_003179363.1 Trm112 family protein -
  ACMTA2_RS23905 lpxK 5474493..5475503 (-) 1011 WP_413792049.1 tetraacyldisaccharide 4'-kinase -
  ACMTA2_RS23910 - 5475503..5475931 (-) 429 WP_013694002.1 ExbD/TolR family protein -
  ACMTA2_RS23915 exbB 5475928..5476563 (-) 636 WP_413795711.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMTA2_RS23920 comA 5476659..5478905 (-) 2247 WP_413792050.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMTA2_RS23925 - 5479050..5479565 (+) 516 WP_413792051.1 DUF2062 domain-containing protein -
  ACMTA2_RS23930 - 5479754..5480533 (-) 780 WP_053124195.1 ABC transporter permease -
  ACMTA2_RS23935 - 5480536..5481468 (-) 933 WP_413792052.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22785.85 Da        Isoelectric Point: 7.3613

>NTDB_id=1170552 ACMTA2_RS23915 WP_413795711.1 5475928..5476563(-) (exbB) [Pseudomonas sp. N4 isolate ena-SAMPLE-TAB-27-01-2025-11:39:45:924-2052]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMSTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1170552 ACMTA2_RS23915 WP_413795711.1 5475928..5476563(-) (exbB) [Pseudomonas sp. N4 isolate ena-SAMPLE-TAB-27-01-2025-11:39:45:924-2052]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGTTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGCTGGGGGAGGTTCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAACGCTACAT
CAGTACCCTGGGCACCATCGCCGCCATGTCCCCACTGCTGGGCCTGCTGGGCACGGTACTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGAGTACCAATGCCGCCGTGCTGGCAGGGGGGATTTCCAAGGCCCTGATCACCACGGCC
GCCGGCCTGATGGTCGGTATTCCCGCCGTATTCTTCCATCGATTCCTGCAACGCCGCGTCGATGAGTTGGTCGTCGGTAT
GGAGCAGGAAGCCATCAAGCTCGTCGAGGTGGTGCAGGGTGACCGTGATGTGGACCTGGCTGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment