Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACMFWW_RS01560 Genome accession   NZ_OZ221290
Coordinates   348811..350187 (-) Length   458 a.a.
NCBI ID   WP_413212972.1    Uniprot ID   -
Organism   Paraburkholderia kururiensis isolate ABIP2054     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343811..355187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMFWW_RS01540 (PK2054_A0335) leuA 344012..345709 (-) 1698 WP_413212968.1 2-isopropylmalate synthase -
  ACMFWW_RS01545 (PK2054_A0336) ybiB 346055..347050 (-) 996 WP_413212969.1 DNA-binding protein YbiB -
  ACMFWW_RS01550 (PK2054_A0337) - 347316..348014 (+) 699 WP_413212970.1 fumarylacetoacetate hydrolase family protein -
  ACMFWW_RS01555 (PK2054_A0338) maiA 348042..348686 (+) 645 WP_413212971.1 maleylacetoacetate isomerase -
  ACMFWW_RS01560 (PK2054_A0339) pilA 348811..350187 (-) 1377 WP_413212972.1 signal recognition particle-docking protein FtsY Machinery gene
  ACMFWW_RS01565 (PK2054_A0340) rsmD 350434..351063 (+) 630 WP_413212973.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACMFWW_RS01570 (PK2054_A0341) coaD 351174..351683 (+) 510 WP_017772636.1 pantetheine-phosphate adenylyltransferase -
  ACMFWW_RS01575 (PK2054_A0342) - 351841..352098 (+) 258 WP_017772637.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ACMFWW_RS01580 (PK2054_A0343) hisC 352131..353201 (-) 1071 WP_413212974.1 histidinol-phosphate transaminase -
  ACMFWW_RS01585 (PK2054_A0344) pth 353221..353820 (-) 600 WP_017772639.1 aminoacyl-tRNA hydrolase -
  ACMFWW_RS01590 (PK2054_A0345) - 353959..354579 (-) 621 WP_017772640.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 47730.55 Da        Isoelectric Point: 4.9236

>NTDB_id=1170523 ACMFWW_RS01560 WP_413212972.1 348811..350187(-) (pilA) [Paraburkholderia kururiensis isolate ABIP2054]
MFSFFKRFRGSKAAEGTPVDAQADVSAEVQSEPAQQPADVAETRPPQEAAARVTPAAAPVAAPAPVPSARQPEAAPPQQR
PAVDIPAPAPAPTPAPPAVTPPTVAAPPVATAPAAMPAPAPTQAAAQQATASAAQSSQADDESVETVEIVPPPAPEPEAK
KSWLSRLRSGLSKTSSNIAGIFVATKIDEELYEELETALLMSDAGVEATEFLLESLREKVRTGRLTDAQQVKTALRGLLV
DLLKPLEKSLVLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVAQES
GDPAAVIFDAVGAARARKIDVLMADTAGRLPTQLHLMEELRKVKRVIGKALDGAPHEVLLVIDANTGQNALAQVKAFDDA
LGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFADALLGA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1170523 ACMFWW_RS01560 WP_413212972.1 348811..350187(-) (pilA) [Paraburkholderia kururiensis isolate ABIP2054]
ATGTTCAGTTTTTTCAAGCGATTCAGAGGATCGAAAGCCGCCGAAGGCACGCCCGTCGACGCGCAAGCCGATGTCTCGGC
CGAGGTTCAAAGCGAACCCGCGCAACAGCCCGCCGACGTCGCGGAAACCAGACCGCCGCAGGAGGCAGCCGCTCGCGTCA
CGCCAGCCGCGGCGCCGGTAGCGGCACCGGCACCGGTGCCGTCCGCGCGCCAGCCCGAAGCTGCGCCGCCTCAACAGCGG
CCCGCCGTCGATATCCCGGCGCCGGCGCCTGCGCCCACGCCCGCGCCACCAGCCGTCACGCCGCCGACCGTAGCAGCACC
GCCGGTCGCGACGGCTCCCGCCGCGATGCCTGCGCCCGCCCCGACCCAAGCCGCCGCACAACAGGCCACCGCCAGCGCTG
CCCAAAGCAGCCAGGCCGACGACGAATCCGTCGAAACAGTCGAAATCGTTCCGCCGCCCGCACCGGAACCCGAAGCGAAG
AAGTCGTGGCTCTCGCGGCTTAGAAGCGGCCTCTCCAAAACCAGCTCGAACATTGCGGGCATCTTCGTCGCCACCAAGAT
CGACGAAGAGCTGTACGAAGAACTGGAGACCGCGCTGCTGATGTCCGATGCGGGGGTGGAAGCCACGGAGTTCCTGCTCG
AATCGCTGCGCGAGAAAGTCCGCACGGGCAGGCTCACCGACGCACAGCAGGTGAAAACCGCGTTGCGCGGCCTGCTCGTG
GACCTGCTGAAGCCGCTCGAGAAATCGCTCGTGCTCGGCCGTGCGCAGCCGCTCGTCATGATGATCGCGGGTGTGAACGG
TGCGGGCAAAACCACGAGCATCGGAAAGCTCGCCAAGCATCTGCAGCGCTTCGATCAGTCGGTACTGCTCGCGGCCGGCG
ACACATTCCGCGCCGCCGCGCGCGAGCAACTCGCCATCTGGGGCGAGCGCAACAACGTGACGGTGGTCGCGCAGGAAAGC
GGCGACCCTGCCGCCGTGATCTTCGACGCGGTGGGCGCCGCGCGCGCGCGCAAGATCGACGTGCTGATGGCCGACACGGC
CGGCCGCCTGCCCACCCAGCTCCATCTGATGGAAGAGTTGCGCAAGGTGAAGCGCGTGATCGGCAAGGCGCTCGACGGCG
CGCCGCACGAAGTGCTGCTCGTGATCGACGCGAACACGGGTCAGAACGCGCTCGCCCAGGTGAAAGCATTCGACGACGCG
CTCGGCCTGACCGGCCTCATCGTCACGAAGCTCGACGGCACGGCGAAGGGCGGCATCCTCGCTGCCATCGCGCGGCAGCG
GCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAAAAGGTGGAAGACCTGCAGCCGTTCAGCGCCGAGGAATTTGCCGACG
CGCTACTGGGCGCGTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(180-236)

SRP54-type protein, GTPase domain (SRP54)

(258-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.458

100

0.498

Multiple sequence alignment