Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AW03_RS11835 Genome accession   NZ_CP007173
Coordinates   2321409..2322212 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316409..2327212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS11805 (AW03_022750) glpQB 2317552..2318283 (-) 732 WP_015384062.1 glycerophosphodiester phosphodiesterase -
  AW03_RS11810 (AW03_022760) yqiI 2318356..2318976 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  AW03_RS11815 (AW03_022770) - 2318996..2319292 (-) 297 WP_015384064.1 hypothetical protein -
  AW03_RS21695 - 2319600..2319752 (+) 153 WP_015384065.1 hypothetical protein -
  AW03_RS11825 (AW03_022780) yqiG 2319825..2320943 (+) 1119 WP_015483421.1 NADH-dependent flavin oxidoreductase -
  AW03_RS11835 (AW03_022800) spo0A 2321409..2322212 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AW03_RS11845 (AW03_022810) spoIVB 2322477..2323757 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  AW03_RS11850 (AW03_022820) recN 2323932..2325662 (-) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  AW03_RS11855 (AW03_022830) argR 2325699..2326148 (-) 450 WP_015384067.1 arginine repressor ArgR -
  AW03_RS11860 (AW03_022840) yqxC 2326188..2327090 (-) 903 WP_046340249.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=117044 AW03_RS11835 WP_003226427.1 2321409..2322212(-) (spo0A) [Bacillus subtilis HJ5]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=117044 AW03_RS11835 WP_003226427.1 2321409..2322212(-) (spo0A) [Bacillus subtilis HJ5]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTCAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment