Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AW03_RS10845 Genome accession   NZ_CP007173
Coordinates   2145512..2146132 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2140512..2151132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS10805 (AW03_020770) ptsA 2141645..2142151 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  AW03_RS10810 (AW03_020780) ypqA 2142289..2142708 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  AW03_RS10815 (AW03_020790) sppG 2142729..2143106 (-) 378 WP_014477159.1 YppG family protein -
  AW03_RS10820 (AW03_020800) yppF 2143293..2143481 (+) 189 WP_003230690.1 YppF family protein -
  AW03_RS10825 (AW03_020810) yppE 2143520..2143891 (-) 372 WP_015483369.1 YppE family protein -
  AW03_RS10830 (AW03_020820) yppD 2143937..2144182 (-) 246 WP_004398488.1 YppD family protein -
  AW03_RS10835 (AW03_020830) sspM 2144380..2144484 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AW03_RS10840 (AW03_020840) yppC 2144509..2145471 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  AW03_RS10845 (AW03_020850) recU 2145512..2146132 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AW03_RS10850 (AW03_020860) ponA 2146154..2148904 (+) 2751 WP_015383947.1 PBP1A family penicillin-binding protein -
  AW03_RS10855 (AW03_020870) ypoC 2148980..2149474 (-) 495 WP_015383948.1 YpoC family protein -
  AW03_RS10860 (AW03_020880) nth 2149471..2150130 (-) 660 WP_015483371.1 endonuclease III -
  AW03_RS10865 (AW03_020890) dnaD 2150149..2150847 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=117043 AW03_RS10845 WP_004399067.1 2145512..2146132(+) (recU) [Bacillus subtilis HJ5]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=117043 AW03_RS10845 WP_004399067.1 2145512..2146132(+) (recU) [Bacillus subtilis HJ5]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment