Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACLV7W_RS01715 Genome accession   NZ_OZ217346
Coordinates   354065..355825 (+) Length   586 a.a.
NCBI ID   WP_411865325.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 349065..360825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS01695 (SMID22_03450) - 349500..350870 (+) 1371 WP_411865321.1 MATE family efflux transporter -
  ACLV7W_RS01700 (SMID22_03460) - 350967..351683 (+) 717 WP_411865322.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACLV7W_RS01705 (SMID22_03470) - 351861..352322 (+) 462 WP_411865323.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLV7W_RS01710 (SMID22_03480) rcrP 352306..354075 (+) 1770 WP_411865324.1 ABC transporter ATP-binding protein Regulator
  ACLV7W_RS01715 (SMID22_03490) rcrQ 354065..355825 (+) 1761 WP_411865325.1 ABC transporter ATP-binding protein Regulator
  ACLV7W_RS01720 (SMID22_03500) - 356063..356566 (+) 504 WP_411865326.1 phosphatase PAP2 family protein -
  ACLV7W_RS01725 (SMID22_03510) - 356680..357126 (+) 447 WP_411865327.1 LytTR family DNA-binding domain-containing protein -
  ACLV7W_RS01730 (SMID22_03520) - 357131..357805 (+) 675 WP_153208836.1 LiaF transmembrane domain-containing protein -
  ACLV7W_RS01735 (SMID22_03530) rpmB 357911..358099 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  ACLV7W_RS01740 (SMID22_03540) - 358255..358620 (+) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  ACLV7W_RS01745 (SMID22_03550) - 358623..360290 (+) 1668 WP_060627476.1 DAK2 domain-containing protein -
  ACLV7W_RS01750 (SMID22_03560) - 360415..360621 (+) 207 WP_194251492.1 hypothetical protein -
  ACLV7W_RS01755 (SMID22_03570) - 360618..360812 (+) 195 WP_153208838.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64827.51 Da        Isoelectric Point: 4.8049

>NTDB_id=1170427 ACLV7W_RS01715 WP_411865325.1 354065..355825(+) (rcrQ) [Streptococcus mitis isolate S. mitis D22]
MENKRMSLWKQSKPYLAGLQFALLIAFLATILSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQTFLFTTAIQRFSERLRRAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSTLLVVAVLVTM
FGMNWILALVTVASTLIGFAFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFATLNHRLYNS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMEDESYKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDEGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKGISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1170427 ACLV7W_RS01715 WP_411865325.1 354065..355825(+) (rcrQ) [Streptococcus mitis isolate S. mitis D22]
ATGGAAAATAAAAGAATGTCTCTCTGGAAACAGAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTAATCGCCTT
TTTAGCAACAATCCTATCCAATATCATTACTGTTTATGGGCCAACTCGTATCAAGGAAATGACCAATATCATTGCCAGTG
GTCTAGAAACAAGTGTGGATGTCGCTGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTTATCTATGTGATTGGACTTCTA
TCAAATTATTTGCAAACCTTTCTGTTTACAACAGCCATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCGATTGCAGAGAA
AATTAATCGTCTTCCATTGGGGTATTTTGATGGACATTCTCAAGGGGATACCTTGTCTCGTGTGACTAATGACGTTGACA
CTGCAGCCCAATCCCTCAATCAAAGTCTGGGAACAGTTCTTTCATCCACTTTACTGGTCGTGGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGCTTCAACTCTTATCGGTTTTGCTTTTGTGTCCGTCTTTATGGG
CAAATCGCAGGGATTCTTTAAGAGTCAGCAACAGGATTTGGCGGCTGTCAATGGCTATGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCTATCGAGAGCACAAAAGAAGAATTTGCGACATTAAACCATCGTCTGTATAACAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATCATGATGTTCATTGGGAACTTTAGCTATGCCTTAGTGAT
TATCGTCGGTGCAGCCTTGGCCTTAAATGGGCAGATTAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTGCGTATCT
TTTCTCAGCCCCTTTCACAAATCGCTCAAGGGATTACCAGTCTTCAGCAGGCTAGCGCAGCCATGGGACGTGTCTTCGAA
TTTCTAGCTGAAGAGGAAATGGAAGATGAATCTTATAAAGAAAGACAACTGAGCGACATGAAAGGTCAAGTAGTCTTTGA
TCGAGTTTCCTTTGGTTACACACCAGAGCGAACCATCATCCATGACTTTTCTGCGACAGCTCATGCAGGTCAAAAGGTCG
CGATTGTCGGACCGACAGGAGCTGGTAAGACAACTATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATGAGGGAAGT
ATCCGCATTGATGGCGTGGATACCAAGGAGATGAAGCGTTCGGAAGTACATGATGCCTTTTCAATGGTCTTGCAGGATAC
TTGGCTCTTTGAAGGTACTATCCGAGATAATCTCATCTATAACCAAAAGGGGATTAGTGATGAGCGTGTGATTGAAGCCA
GCAAGGCTGTGGGGATTCACCACTTTATCATGACCCTGCCAGATGGTTATGATACTGTCTTGGATGATACAGTAACCTTG
TCTGTCGGACAAAAACAACTCTTGACCATTGCTCGTGCTTTGCTGAAAGATGCGCCACTCCTAATCCTAGATGAAGCGAC
TTCTTCTGTTGATACCCGTACAGAGGAATTGATTCAGAAAGCTATGGATCGTTTGATGGAGGGCAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACCATCCGTAATGCTGACTTGATTCTTGTCATGAAAGACGGCAATATCATCGAGCAAGGCAAT
CATGAGGAGCTAATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.267

99.659

0.66

Multiple sequence alignment