Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACLV7D_RS07960 Genome accession   NZ_OZ217345
Coordinates   1663456..1663749 (-) Length   97 a.a.
NCBI ID   WP_112445038.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1663792..1674280 1663456..1663749 flank 43
IS/Tn 1663792..1664283 1663456..1663749 flank 43


Gene organization within MGE regions


Location: 1663456..1674280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS07960 (SMIF22_15720) HI0659 1663456..1663749 (-) 294 WP_112445038.1 helix-turn-helix domain-containing protein Machinery gene
  ACLV7D_RS07965 (SMIF22_15730) - 1663798..1664283 (-) 486 Protein_1522 transposase -
  ACLV7D_RS07970 (SMIF22_15740) - 1664439..1665440 (+) 1002 WP_164226401.1 endonuclease/exonuclease/phosphatase family protein -
  ACLV7D_RS07975 (SMIF22_15750) pheT 1665662..1668067 (-) 2406 WP_164226402.1 phenylalanine--tRNA ligase subunit beta -
  ACLV7D_RS07980 (SMIF22_15760) - 1668144..1668653 (-) 510 WP_112445029.1 GNAT family N-acetyltransferase -
  ACLV7D_RS07985 (SMIF22_15770) pheS 1668653..1669699 (-) 1047 WP_112445101.1 phenylalanine--tRNA ligase subunit alpha -
  ACLV7D_RS07990 (SMIF22_15780) - 1670157..1671572 (-) 1416 WP_164226403.1 glycoside hydrolase family 1 protein -
  ACLV7D_RS07995 (SMIF22_15790) - 1671585..1673423 (-) 1839 WP_218764787.1 beta-glucoside-specific PTS transporter subunit IIABC -
  ACLV7D_RS08000 (SMIF22_15800) licT 1673441..1674280 (-) 840 WP_000584532.1 BglG family transcription antiterminator LicT -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10758.33 Da        Isoelectric Point: 4.8723

>NTDB_id=1170383 ACLV7D_RS07960 WP_112445038.1 1663456..1663749(-) (HI0659) [Streptococcus mitis isolate S. mitis F22]
MENSAIGSNWKDVRSQLFTKEEILESDMRVAIMSELIEARHDQGISQKKLEEFSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1170383 ACLV7D_RS07960 WP_112445038.1 1663456..1663749(-) (HI0659) [Streptococcus mitis isolate S. mitis F22]
ATGGAGAATAGTGCTATTGGGAGTAACTGGAAGGATGTCCGATCTCAACTCTTTACAAAGGAGGAAATTCTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAGCTGATTGAGGCTAGGCATGACCAAGGAATCAGCCAGAAAAAGCTGGAAGAATTCA
GTGGAGTAAGCCAGCCTGTCATAGCTAGGATGGAAACAGGCAAGACAAGTCCTCAGTTGGATACAGTCTTGAAAGTTTTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCCCTCGAACAGGAAAAGAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.551

91.753

0.546

Multiple sequence alignment