Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AW03_RS07550 Genome accession   NZ_CP007173
Coordinates   1439811..1440386 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434811..1445386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS07520 (AW03_014330) dapD 1434999..1435709 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AW03_RS07525 (AW03_014340) dapI 1435779..1436903 (+) 1125 WP_015383541.1 N-acetyldiaminopimelate deacetylase -
  AW03_RS07530 (AW03_014350) ykuS 1436965..1437210 (+) 246 WP_003232382.1 YkuS family protein -
  AW03_RS07535 (AW03_014360) mscT 1437247..1438050 (-) 804 WP_041517839.1 small-conductance mechanosensitive channel protein MscT -
  AW03_RS07540 (AW03_014370) ahpA 1438287..1438829 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  AW03_RS07545 (AW03_014380) ykuV 1438899..1439345 (+) 447 WP_015483177.1 thiol-disulfide oxidoreductase YkuV -
  AW03_RS07550 (AW03_014390) rok 1439811..1440386 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  AW03_RS07555 (AW03_014400) cse15 1440427..1441392 (-) 966 WP_015383544.1 spore protein Cse15 -
  AW03_RS07560 (AW03_014410) mobA 1441529..1442128 (+) 600 WP_015383545.1 molybdenum cofactor guanylyltransferase -
  AW03_RS07565 (AW03_014420) moeB 1442179..1443198 (+) 1020 WP_015383546.1 molybdopterin-synthase adenylyltransferase MoeB -
  AW03_RS07570 (AW03_014430) glp 1443216..1444508 (+) 1293 WP_015383547.1 gephyrin-like molybdotransferase Glp -
  AW03_RS07575 (AW03_014440) mobB 1444469..1444990 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=117038 AW03_RS07550 WP_003232378.1 1439811..1440386(+) (rok) [Bacillus subtilis HJ5]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=117038 AW03_RS07550 WP_003232378.1 1439811..1440386(+) (rok) [Bacillus subtilis HJ5]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment