Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACLV7D_RS01725 Genome accession   NZ_OZ217345
Coordinates   342356..344116 (+) Length   586 a.a.
NCBI ID   WP_218764806.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 337356..349116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS01710 (SMIF22_03300) - 339259..339975 (+) 717 WP_049524687.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACLV7D_RS01715 (SMIF22_03310) - 340152..340622 (+) 471 WP_173226176.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLV7D_RS01720 (SMIF22_03320) rcrP 340597..342366 (+) 1770 WP_218764807.1 ABC transporter ATP-binding protein Regulator
  ACLV7D_RS01725 (SMIF22_03330) rcrQ 342356..344116 (+) 1761 WP_218764806.1 ABC transporter ATP-binding protein Regulator
  ACLV7D_RS01730 (SMIF22_03340) - 344212..344715 (+) 504 WP_218764805.1 phosphatase PAP2 family protein -
  ACLV7D_RS01735 (SMIF22_03350) - 344935..345381 (+) 447 WP_218764804.1 LytTR family DNA-binding domain-containing protein -
  ACLV7D_RS01740 (SMIF22_03360) - 345386..346060 (+) 675 WP_050243275.1 hypothetical protein -
  ACLV7D_RS01745 (SMIF22_03370) - 346304..346501 (+) 198 Protein_310 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLV7D_RS01750 - 346526..346657 (-) 132 WP_268810481.1 hypothetical protein -
  ACLV7D_RS01755 (SMIF22_03380) - 346751..347050 (+) 300 WP_218764802.1 DUF4651 domain-containing protein -
  ACLV7D_RS01760 (SMIF22_03390) - 347047..347364 (+) 318 WP_000615777.1 thioredoxin family protein -
  ACLV7D_RS01765 (SMIF22_03400) ytpR 347380..348006 (+) 627 WP_218764801.1 YtpR family tRNA-binding protein -
  ACLV7D_RS01770 (SMIF22_03410) - 348048..348809 (+) 762 WP_218764800.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64742.58 Da        Isoelectric Point: 5.2313

>NTDB_id=1170349 ACLV7D_RS01725 WP_218764806.1 342356..344116(+) (rcrQ) [Streptococcus mitis isolate S. mitis F22]
MENKKMSLWEQSKPYLAGLQFALLIAFLATIVSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINRLPLRYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVLAVLVTM
FGMNWILALVTVVSTLIGFVFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMGDESHKERQLTNMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVNTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKGISDGRVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEDQAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1170349 ACLV7D_RS01725 WP_218764806.1 342356..344116(+) (rcrQ) [Streptococcus mitis isolate S. mitis F22]
ATGGAAAATAAGAAAATGTCTCTTTGGGAACAGAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTGATCGCCTT
TCTAGCAACAATCGTATCCAATATCATTACTGTATATGGTCCAACTCGCATCAAGGAAATGACTAATATTATTGCCAGTG
GTCTGGAAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATCGGACTTCTA
TCAAATTATTTACAGGCCTTTCTGTTTACAACAGCCATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCTATTGCAGAGAA
AATCAATCGCCTACCATTGAGATATTTTGATGGACACTCTCAGGGGGATACCTTGTCTCGTGTAACCAATGATGTTGACA
CTGCAGCCCAGTCCCTCAATCAAAGTCTAGGAACAGTTCTTTCATCTAGTTTATTGGTCTTAGCAGTATTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACTCTTATTGGTTTTGTTTTCGTGTCTGTCTTTATGGG
CAAATCACAGGGCTTTTTTAAGAGTCAGCAACAAGATTTGGCAGCTGTCAATGGCTACGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCTATCGAGAGCACCAAAGAAGAGTTTGCGAAATTAAACAATCGTCTGTATGATAGT
ATCTGGAAATCTCAATTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATCGTTGGTGCAGCCTTGGCTCTGAATGGGCAGATTAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCCCTTTCACAAATCGCCCAAGGGATTACTAGTTTGCAGCAGGCTAGTGCAGCCATGGGACGTGTCTTCGAA
TTTCTAGCTGAAGAGGAAATGGGAGACGAATCCCATAAAGAAAGACAATTGACCAACATGAAAGGTCAAGTGGTCTTTGA
TCGAGTTTCCTTTGGTTACACACCAGAGAGAACTATCATCCATGACTTTTCTGCGACCGCTCATGCAGGGCAAAAGGTTG
CCATTGTCGGACCGACTGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTTTATGAGATTGATAAGGGGAGT
ATCCGTATCGATGGTGTGAATACCAAGGAGATGAAGCGTTCGGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
CTGGCTCTTTGAAGGTACTATCCGAGATAATCTCATCTATAACCAAAAGGGGATTAGTGATGGGCGCGTGATTGAAGCCA
GCAAGGCTGTGGGGATTCACCACTTTATTATGACCCTACCAGATGGTTACGATACCGTCTTGGATGATACAGTAACCTTG
TCTGTCGGACAAAAACAACTCTTAACTATTGCTCGAGCTTTGTTGAAAGATGCACCACTCCTAATCCTAGATGAGGCGAC
TTCTTCTGTTGATACTCGGACGGAAGAGTTAATCCAGAAAGCCATGGATCGTTTGATGGAGGGCAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCTACTATCCGAAATGCTGATCTTATTCTCGTCATGAAAGATGGTAATATCATCGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGCTGGTTTCTACGCTGATCTCTACAACAGTCAATTTACAGAAGACCAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.952

99.659

0.667

Multiple sequence alignment