Detailed information NTG0117028

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: AW03_RS05960
• Genome accession: NZ_CP007173
• Coordinates: 1159290..1160243 (+)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis HJ5
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1154290..1165243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AW03_RS05935 (AW03_011240)	argF	1156121..1157080 (+)	960	WP_015383338.1	ornithine carbamoyltransferase	-
AW03_RS05940 (AW03_011250)	yjzC	1157166..1157345 (+)	180	WP_003245356.1	YjzC family protein	-
AW03_RS05945 (AW03_011260)	yjzD	1157391..1157576 (-)	186	WP_003245236.1	DUF2929 domain-containing protein	-
AW03_RS05950 (AW03_011270)	-	1157827..1158561 (+)	735	WP_015483082.1	hypothetical protein	-
AW03_RS05955 (AW03_011280)	-	1158643..1159200 (+)	558	WP_015383340.1	hypothetical protein	-
AW03_RS05960 (AW03_011290)	med	1159290..1160243 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
AW03_RS05965 (AW03_011300)	comZ	1160258..1160449 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
AW03_RS05970 (AW03_011310)	yjzB	1160479..1160715 (-)	237	WP_015383342.1	spore coat protein YjzB	-
AW03_RS05975 (AW03_011320)	fabH	1160880..1161818 (+)	939	WP_015483083.1	beta-ketoacyl-ACP synthase III	-
AW03_RS05980 (AW03_011330)	fabF	1161841..1163082 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
AW03_RS05985 (AW03_011340)	yjaZ	1163158..1163943 (+)	786	WP_015383343.1	DUF2268 domain-containing protein	-
AW03_RS05990 (AW03_011350)	appD	1164136..1165122 (+)	987	WP_015383344.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=117028 AW03_RS05960 WP_014476425.1 1159290..1160243(+) (med) [Bacillus subtilis HJ5]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=117028 AW03_RS05960 WP_014476425.1 1159290..1160243(+) (med) [Bacillus subtilis HJ5]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997