Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AW03_RS05505 Genome accession   NZ_CP007173
Coordinates   1070504..1071082 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065504..1076082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS05485 (AW03_010350) hemAT 1066015..1067313 (-) 1299 WP_015483047.1 heme-based aerotactic transducer HemAT -
  AW03_RS05490 (AW03_010360) comW 1067452..1068981 (-) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  AW03_RS05495 (AW03_010370) yhxC 1069093..1069950 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  AW03_RS05500 (AW03_010380) yhzC 1069978..1070211 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  AW03_RS05505 (AW03_010390) comK 1070504..1071082 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  AW03_RS05510 (AW03_010400) yhxD 1071129..1072028 (-) 900 WP_015483051.1 SDR family oxidoreductase -
  AW03_RS05515 (AW03_010410) yhjA 1072246..1072515 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  AW03_RS05520 (AW03_010420) yhjB 1072559..1074028 (-) 1470 WP_015383277.1 sodium:solute symporter -
  AW03_RS05525 (AW03_010430) yhjC 1074025..1074225 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AW03_RS05530 (AW03_010440) - 1074424..1074795 (-) 372 WP_015383278.1 hypothetical protein -
  AW03_RS05535 (AW03_010450) yhjE 1074947..1075570 (+) 624 WP_010886465.1 VTT domain-containing protein -
  AW03_RS05540 (AW03_010460) lepB 1075572..1076078 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=117025 AW03_RS05505 WP_015483050.1 1070504..1071082(+) (comK) [Bacillus subtilis HJ5]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=117025 AW03_RS05505 WP_015483050.1 1070504..1071082(+) (comK) [Bacillus subtilis HJ5]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment