Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACLV7Z_RS08230 Genome accession   NZ_OZ217343
Coordinates   1650572..1650865 (-) Length   97 a.a.
NCBI ID   WP_218774493.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1650918..1651299 1650572..1650865 flank 53


Gene organization within MGE regions


Location: 1650572..1651299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS08230 (SMIG22_16190) HI0659 1650572..1650865 (-) 294 WP_218774493.1 helix-turn-helix domain-containing protein Machinery gene
  ACLV7Z_RS08235 (SMIG22_16200) - 1650918..1651082 (-) 165 WP_411882192.1 hypothetical protein -
  ACLV7Z_RS08240 (SMIG22_16210) - 1651092..1651299 (-) 208 Protein_1575 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10706.43 Da        Isoelectric Point: 9.6898

>NTDB_id=1170221 ACLV7Z_RS08230 WP_218774493.1 1650572..1650865(-) (HI0659) [Streptococcus mitis isolate S. mitis G22]
MKNSAIGSNWKDVRSQLFTKEEILESDMRVAIMSELIEARYKQGISQKKLEELSGVSQPVISRMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQGKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1170221 ACLV7Z_RS08230 WP_218774493.1 1650572..1650865(-) (HI0659) [Streptococcus mitis isolate S. mitis G22]
ATGAAGAATAGTGCTATCGGGAGTAACTGGAAGGATGTCCGATCTCAACTCTTTACCAAGGAGGAAATTCTTGAAAGTGA
TATGCGGGTAGCTATCATGAGCGAGTTGATTGAAGCCAGATATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTTA
GTGGAGTAAGCCAGCCTGTAATATCTAGAATGGAAACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTGAAAGTTTTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCACTCGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment