Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACLV65_RS01830 Genome accession   NZ_OZ217342
Coordinates   364493..366253 (+) Length   586 a.a.
NCBI ID   WP_411864380.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 359493..371253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01810 (SMIB22_03500) - 359974..360690 (+) 717 WP_000532883.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACLV65_RS01815 (SMIB22_03510) - 360732..361988 (-) 1257 WP_411865198.1 ISL3 family transposase -
  ACLV65_RS01820 (SMIB22_03520) - 362289..362759 (+) 471 WP_000360537.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLV65_RS01825 (SMIB22_03530) rcrP 362734..364503 (+) 1770 WP_411864379.1 ABC transporter ATP-binding protein Regulator
  ACLV65_RS01830 (SMIB22_03540) rcrQ 364493..366253 (+) 1761 WP_411864380.1 ABC transporter ATP-binding protein Regulator
  ACLV65_RS01835 (SMIB22_03550) - 366349..366852 (+) 504 WP_411864381.1 phosphatase PAP2 family protein -
  ACLV65_RS01840 (SMIB22_03560) - 366966..367412 (+) 447 WP_411864382.1 LytTR family DNA-binding domain-containing protein -
  ACLV65_RS01845 (SMIB22_03570) - 367417..368091 (+) 675 WP_411864383.1 hypothetical protein -
  ACLV65_RS01850 (SMIB22_03580) - 368334..368531 (+) 198 Protein_331 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLV65_RS01855 - 368556..368687 (-) 132 WP_033679736.1 hypothetical protein -
  ACLV65_RS01860 (SMIB22_03590) - 368781..369080 (+) 300 WP_050202793.1 DUF4651 domain-containing protein -
  ACLV65_RS01865 (SMIB22_03600) - 369077..369394 (+) 318 WP_000615777.1 thioredoxin family protein -
  ACLV65_RS01870 (SMIB22_03610) ytpR 369410..370036 (+) 627 WP_140224430.1 YtpR family tRNA-binding protein -
  ACLV65_RS01875 (SMIB22_03620) - 370078..370839 (+) 762 WP_411864384.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64549.20 Da        Isoelectric Point: 4.7929

>NTDB_id=1170103 ACLV65_RS01830 WP_411864380.1 364493..366253(+) (rcrQ) [Streptococcus mitis isolate S. mitis B22]
MENKKMSLWKQSKPYLAGLQFALLIAFLAAIVSNIITVYGPTRIKEMTNIIANGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAIAEKINSLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVLAVLVTM
FGMNWILALVTVVSTLVGFVFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVASYNAIESTKEEFTTLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGVIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMEDESHKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKEMKRSEVHEAFSMVLQDTWLFEGTIRDNLIYNQTGISDGRVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1170103 ACLV65_RS01830 WP_411864380.1 364493..366253(+) (rcrQ) [Streptococcus mitis isolate S. mitis B22]
ATGGAAAATAAAAAAATGTCTCTTTGGAAACAGAGTAAACCCTATCTTGCAGGCCTCCAGTTTGCCCTTCTGATAGCCTT
TCTAGCAGCAATCGTATCCAATATCATTACTGTTTATGGGCCGACTCGCATCAAGGAAATGACCAATATCATTGCAAATG
GTCTGGAAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATCGGACTTCTA
TCAAATTATTTACAGGCATTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCTATTGCAGAGAA
AATCAATAGCCTGCCATTGGGATATTTTGATGGACATTCTCAAGGAGATACCTTGTCTCGTGTAACCAATGACGTTGACA
CTGCAGCCCAGTCCCTTAATCAAAGTCTGGGAACAGTTCTTTCATCTAGTTTATTGGTCTTAGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTTTCAACTCTTGTTGGTTTTGTTTTCGTGTCCGTCTTTATGGG
TAAATCCCAGGGCTTCTTTAAGAGTCAGCAACAGGATTTGGCAGCTGTCAATGGTTATGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGGCTAGTTACAATGCCATCGAGAGCACGAAAGAAGAATTTACGACATTAAATAATCGTCTGTATGACAGT
ATCTGGAAGTCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATCGTTGGTGCAGCCTTGGCTCTGAATGGGCAGATTAGTATCGGGGTTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCTCTTTCACAAATTGCCCAAGGGATTACTAGTCTTCAGCAGGCTAGTGCAGCCATGGGACGTGTCTTCGAA
TTCCTAGCTGAAGAGGAAATGGAAGACGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTGGTCTTTGA
TCGAGTTTCCTTTGGTTACACACCAGAGAGAACTATCATCCATGACTTTTCTGCGACCGCTCATGCAGGGCAAAAGGTTG
CCATTGTCGGACCGACTGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTTTATGAGATTGATAAGGGAAGT
ATCCGCATCGATGGCGTGGATACCAAGGAGATGAAGCGTTCGGAAGTACACGAAGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGAACTATTCGCGACAATCTTATCTATAACCAAACAGGTATTAGTGATGGGCGCGTGATTGAAGCCA
GCAAGGCTGTTGGGATTCACCACTTTATTATGACCCTACCAGATGGTTACGATACCGTCTTGGACGACACAGTGACCTTG
TCTGTCGGACAAAAACAACTCTTGACCATCGCTCGTGCTTTGTTGAAAGATGCGCCACTCTTGATTTTGGATGAGGCGAC
CTCTTCGGTTGATACTCGTACTGAGGAATTAATCCAGAAAGCCATGGACCGATTGATGGAGGGAAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCTACTATTCGAAATGCTGACTTGATTCTTGTCATGAAAGATGGAAATATCATCGAGCAAGGAAAT
CATGATGAGTTGATGGCACAAGGAGGCTTTTACGCTGACCTTTATAACAGTCAATTTACAGAAGATGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.438

99.659

0.662

Multiple sequence alignment