Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACLV65_RS01825 Genome accession   NZ_OZ217342
Coordinates   362734..364503 (+) Length   589 a.a.
NCBI ID   WP_411864379.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 360732..361988 362734..364503 flank 746


Gene organization within MGE regions


Location: 360732..364503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01815 (SMIB22_03510) - 360732..361988 (-) 1257 WP_411865198.1 ISL3 family transposase -
  ACLV65_RS01820 (SMIB22_03520) - 362289..362759 (+) 471 WP_000360537.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLV65_RS01825 (SMIB22_03530) rcrP 362734..364503 (+) 1770 WP_411864379.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65396.84 Da        Isoelectric Point: 5.8836

>NTDB_id=1170102 ACLV65_RS01825 WP_411864379.1 362734..364503(+) (rcrP) [Streptococcus mitis isolate S. mitis B22]
MKKLAKRISGKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPAGMMVGMSFLAFLFSVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDATPTARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLY
SSIQNPAQVQLADENLKGQVEFKDVTFRYAANSEAVIEHVSFRAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSAGEIFV
DGVNVQDYALEDLRNKVGYIPQKAVLFSGDVKGNLDFGQSQETPLSEQAMWQALELAQSKNFIEDKEAGLVSEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1170102 ACLV65_RS01825 WP_411864379.1 362734..364503(+) (rcrP) [Streptococcus mitis isolate S. mitis B22]
ATGAAGAAATTAGCCAAACGAATTAGTGGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACCTGCTTTTCGGT
CTATCTGGAGTTGGAAGTGCCGACCTATATCTCTAAAATTACGGATTTGCTAGGAAGTCAAGGAACCAACTTGGATGAGT
TATGGCAACCAGCAGGTATGATGGTGGGAATGTCCTTTCTGGCTTTCTTGTTCTCAGTTGCAGTTGGATTTTTTGCGTCC
AGAGTAGCTGCTTCTTATACTAGTAGGCTGAGAAGTGATATTTTTAACCGAGTTTTAGACTACTCGCAGACAGAGATTAA
GAAATTCTCTATTCCCAGTCTTCTAACTCGTACTACCAATGATATTACTCAGGTTCAGATGTTGATTACCATGGGCCTAC
AAGTGGTTACGCGTGGTCCGATCATGGCTATCTGGGCCATCGGGAAAATTTTAGGACATTCAGAATATTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTTTTGATGACAACAGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
GGGGTTGACAGATAAACTGAACAGTATTACTCGTGAGAGTTTAACAGGTATTCGTGTCGTTCGTGCCTACAATGCTGAAG
AATACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAACGACGC
TACTCCGACAGCACGTCTGCCTCTCTTTAGCGACATGATTGTTTTCATGTCTTATGCCATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTCCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGTAT
TCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTCGAATTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCAGTTATCGAGCATGTTAGCTTTAGAGCAGAAGCTGGTCAAACAGTGGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTATCAGCAGGAGAGATTTTTGTA
GACGGTGTCAATGTTCAAGACTATGCCTTAGAAGATTTGCGCAACAAGGTTGGCTATATTCCTCAGAAAGCGGTTCTCTT
TTCAGGTGATGTTAAGGGCAATTTGGACTTTGGACAAAGTCAAGAAACACCACTTAGTGAGCAGGCTATGTGGCAAGCTT
TGGAGTTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGTTTAGTGTCAGAAGTGGCCCAAGGAGGAACCAAC
TTCTCAGGTGGTCAAAGACAGCGTCTGGCCATTGCGCGCGCCTTGGCTCGGAAACCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCCTTGGACTACAAGACAGACCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACAAAATCTATGACCAAGCTTA
TCGTCGCTCAGCGAATTTCTACAATTATGGATGCAGATTTGATTTTGGTCTTGGATCAAGGAAAAGTCGTGGGGCAAGGC
ACCCACAAGGAACTTCTAGCTAATAATGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.389

100

0.677

Multiple sequence alignment