Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN5J9_RS00945 Genome accession   NZ_OZ208520
Coordinates   203809..205170 (+) Length   453 a.a.
NCBI ID   WP_418653881.1    Uniprot ID   -
Organism   Tenacibaculum soleae isolate NCIMB 14368(T)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198809..210170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN5J9_RS00915 (TSOLEA_0188) - 199496..200314 (-) 819 WP_418653877.1 glycogen/starch synthase -
  ACN5J9_RS00920 (TSOLEA_0189) panC 200411..201256 (+) 846 WP_418653878.1 pantoate--beta-alanine ligase -
  ACN5J9_RS00925 (TSOLEA_0190) panD 201305..201655 (+) 351 WP_068702345.1 aspartate 1-decarboxylase -
  ACN5J9_RS00930 (TSOLEA_0191) - 201658..202605 (+) 948 WP_418653879.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACN5J9_RS00935 - 202896..203231 (+) 336 WP_418654747.1 GNAT family N-acetyltransferase -
  ACN5J9_RS00940 (TSOLEA_0194) - 203248..203538 (+) 291 WP_418653880.1 YciI family protein -
  ACN5J9_RS00945 (TSOLEA_0195) radA 203809..205170 (+) 1362 WP_418653881.1 DNA repair protein RadA Machinery gene
  ACN5J9_RS00950 - 205576..205758 (-) 183 WP_303558481.1 hypothetical protein -
  ACN5J9_RS00955 (TSOLEA_0197) - 206146..208341 (-) 2196 WP_418653882.1 transglycosylase domain-containing protein -
  ACN5J9_RS00960 (TSOLEA_0198) - 208557..209066 (-) 510 WP_418653883.1 DUF3124 domain-containing protein -
  ACN5J9_RS00965 (TSOLEA_0199) - 209191..209769 (-) 579 WP_418653884.1 NAD(P)H-dependent oxidoreductase -
  ACN5J9_RS00970 (TSOLEA_0200) - 209811..210149 (-) 339 WP_418653885.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49603.17 Da        Isoelectric Point: 7.9915

>NTDB_id=1169902 ACN5J9_RS00945 WP_418653881.1 203809..205170(+) (radA) [Tenacibaculum soleae isolate NCIMB 14368(T)]
MAKTKTTFFCQNCGAQHAQWVGQCGSCKQWNTIVEEVIQKEEKRSWKTPESTQKRVSKPLKVQDIQLNAEERVETKNNEL
DTVLGGGIVKGAVVLLGGEPGIGKSTLLLQIALKIPQKVLYVSGEESQSQIKMRAERLEATNSNCLILTETNTQQIFKNI
EQVKPDVLVIDSIQTLHTNSIEASPGSISQIRETSAELIKFAKETSTPVLLIGHINKEGHIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSSGLREVSNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIHVDDPAIDLAVVAAILSSNQDLAINPNVCFAAEVGLAGEI
RPVSKIDQRIIEAEKLGYKTLVASKYNKISSKNHDIKLVLVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1169902 ACN5J9_RS00945 WP_418653881.1 203809..205170(+) (radA) [Tenacibaculum soleae isolate NCIMB 14368(T)]
ATGGCTAAAACCAAAACTACTTTTTTCTGTCAAAACTGTGGAGCACAACACGCACAATGGGTTGGACAATGTGGCTCATG
TAAACAATGGAACACTATTGTTGAAGAAGTAATTCAAAAAGAAGAAAAAAGAAGTTGGAAAACACCTGAAAGTACTCAAA
AAAGAGTTTCAAAGCCATTAAAAGTACAAGATATTCAGTTAAATGCTGAAGAACGAGTTGAAACAAAAAACAATGAATTA
GATACCGTTTTAGGTGGCGGAATTGTAAAAGGAGCTGTTGTTTTATTAGGTGGTGAACCAGGAATTGGTAAATCAACTTT
GTTACTACAAATAGCTTTAAAAATTCCACAAAAAGTATTGTATGTTTCGGGTGAAGAAAGCCAGTCGCAAATAAAAATGC
GTGCCGAACGTTTAGAAGCTACAAATTCTAATTGTTTAATACTTACCGAAACAAATACACAGCAAATTTTTAAAAATATA
GAACAGGTTAAGCCAGATGTTTTGGTGATTGATTCTATTCAAACCTTACATACAAATTCTATTGAAGCTTCACCAGGAAG
TATTTCTCAAATCCGTGAAACATCTGCAGAGCTGATAAAATTCGCAAAAGAAACTTCAACTCCGGTATTATTAATTGGTC
ATATTAATAAAGAAGGACACATTGCAGGACCTAAAATTTTAGAACACATGGTAGATGTTGTTTTACAGTTTGAAGGCGAC
AGAAATCACACCTATAGAATATTACGTTCTCAGAAAAACCGATTTGGTTCTACTGCTGAACTCGGAATTTATGAAATGTT
ATCTAGTGGTTTACGTGAAGTATCAAACCCATCAGAAATATTAATTTCAAAAAAAGATGCTGATTTAAGCGGAACCGCAA
TTGCATCAACTTTAGAAGGTATTCGTCCTTTAATGATCGAAATTCAAGCATTAGTTTCTACCGCAGTTTACGGTACACCA
CAACGGTCTACCACAGGTTATAATTTAAAAAGATTGCACATGATTTTAGCTGTGCTAGAAAAAAGAGCAGGTTTTAAATT
AGGAGCAAAAGATGTTTTTTTAAATGTTACAGGCGGAATTCATGTAGATGATCCTGCGATAGATTTAGCGGTTGTTGCAG
CGATTTTATCATCAAATCAAGATTTAGCCATAAATCCGAATGTTTGTTTTGCAGCCGAAGTTGGTTTGGCAGGAGAAATA
CGACCAGTTTCTAAAATTGATCAGCGTATCATAGAGGCTGAAAAATTAGGATATAAAACTTTAGTAGCTTCAAAATACAA
TAAAATATCTTCTAAAAACCACGATATAAAACTCGTTTTGGTTGGTAAAATAGAAGAGGCTTTTGCTACGTTGTTTGCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

47.495

100

0.481
  radA Streptococcus mitis SK321

47.495

100

0.481
  radA Streptococcus mitis NCTC 12261

47.495

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.495

100

0.481
  radA Streptococcus pneumoniae D39

47.495

100

0.481
  radA Streptococcus pneumoniae R6

47.495

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

47.797

100

0.479

Multiple sequence alignment