Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN5J5_RS06465 Genome accession   NZ_OZ208512
Coordinates   1399963..1401324 (+) Length   453 a.a.
NCBI ID   WP_418646491.1    Uniprot ID   -
Organism   Tenacibaculum insulae isolate JDTF-31(T)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394963..1406324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN5J5_RS06440 (TINSU_1273) - 1395064..1396665 (-) 1602 WP_418646486.1 DUF4270 family protein -
  ACN5J5_RS06445 (TINSU_1274) - 1396674..1397492 (-) 819 WP_418646487.1 glycogen/starch synthase -
  ACN5J5_RS06450 (TINSU_1275) panC 1397589..1398434 (+) 846 WP_418646488.1 pantoate--beta-alanine ligase -
  ACN5J5_RS06455 (TINSU_1276) panD 1398483..1398833 (+) 351 WP_418646489.1 aspartate 1-decarboxylase -
  ACN5J5_RS06460 (TINSU_1277) - 1398836..1399783 (+) 948 WP_418646490.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACN5J5_RS06465 (TINSU_1278) radA 1399963..1401324 (+) 1362 WP_418646491.1 DNA repair protein RadA Machinery gene
  ACN5J5_RS06470 (TINSU_1279) - 1401326..1402525 (-) 1200 WP_418646492.1 aspartyl protease family protein -
  ACN5J5_RS06475 (TINSU_1280) - 1402608..1403135 (-) 528 WP_418646493.1 hypothetical protein -
  ACN5J5_RS06480 (TINSU_1281) arsM 1403208..1404176 (-) 969 WP_418646494.1 arsenosugar biosynthesis arsenite methyltransferase ArsM -
  ACN5J5_RS06485 (TINSU_1282) - 1404239..1405054 (-) 816 WP_418646495.1 purine-nucleoside phosphorylase -
  ACN5J5_RS06490 (TINSU_1283) - 1405107..1405706 (-) 600 WP_418646496.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase -
  ACN5J5_RS06495 (TINSU_1284) - 1405699..1406160 (-) 462 WP_418646497.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49816.24 Da        Isoelectric Point: 7.1755

>NTDB_id=1169898 ACN5J5_RS06465 WP_418646491.1 1399963..1401324(+) (radA) [Tenacibaculum insulae isolate JDTF-31(T)]
MAKTKTTFFCQNCGAQHAQWSGQCNTCKEWNTIVEEVIQKEEKRSWKTPENTNKRISKPLRVEDIQLNPEERVETKNNEL
DTVLGGGIVKGAVVLLGGEPGIGKSTLLLQIALKIPQKVLYVSGEESQSQIKMRAERLEATNSNCLILTETNTQQIFKNI
EEVQPDVLVIDSIQTLHTNSIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGHIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSSGLREVSNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRTTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIHVDDPAIDLAVVAAILSSNQDMAINPNVCFAAEVGLAGEI
RPVSKIDQRITEAEKLGYKSFVTSKYNKITSKNHSIKLVLVSKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1169898 ACN5J5_RS06465 WP_418646491.1 1399963..1401324(+) (radA) [Tenacibaculum insulae isolate JDTF-31(T)]
ATGGCAAAAACCAAAACTACTTTTTTCTGTCAAAATTGCGGAGCGCAACATGCACAATGGAGCGGACAATGTAATACTTG
TAAAGAATGGAATACTATTGTAGAAGAGGTAATTCAAAAAGAAGAAAAAAGAAGTTGGAAAACTCCTGAAAATACGAATA
AAAGAATCTCAAAACCTCTACGAGTAGAAGACATTCAGTTGAATCCTGAAGAGCGTGTTGAAACTAAAAATAACGAACTA
GATACCGTTTTAGGTGGCGGAATCGTAAAAGGAGCTGTTGTTTTATTGGGTGGTGAACCGGGAATTGGTAAGTCGACTTT
ATTATTACAAATTGCTTTAAAAATTCCGCAAAAAGTATTGTATGTTTCTGGAGAAGAAAGTCAGTCGCAAATTAAAATGC
GTGCCGAACGTTTAGAAGCTACCAATTCTAATTGTTTAATTTTAACAGAAACCAATACCCAACAAATTTTTAAAAACATC
GAAGAAGTTCAACCAGATGTTTTGGTAATTGACTCTATTCAAACATTACACACAAATTCTATTGAAGCATCTCCTGGTAG
TATTTCTCAAATACGTGAAACTTCAGCAGAATTAATAAAGTTTGCCAAAGAAACAGCAACTCCGGTTTTATTAATTGGTC
ATATTAATAAAGAAGGACATATTGCAGGACCAAAAATTCTAGAACACATGGTAGATGTTGTTTTGCAGTTTGAAGGCGAT
AGAAATCACACATATCGTATTTTACGTTCTCAGAAAAACCGATTTGGTTCTACTGCCGAACTCGGAATTTACGAAATGTT
GTCAAGCGGATTACGAGAAGTTTCAAATCCGTCTGAAATATTAATATCAAAAAAAGATGCAGATTTAAGCGGAACTGCCA
TTGCATCAACTTTAGAAGGTATTCGTCCTTTAATGATTGAGATTCAAGCCTTGGTATCAACGGCTGTTTATGGTACACCA
CAACGAACTACAACGGGTTATAATTTAAAGAGATTACACATGATTTTGGCTGTTTTAGAAAAGAGAGCGGGCTTTAAATT
AGGTGCAAAAGATGTGTTTTTAAATGTTACTGGAGGAATACATGTAGATGATCCTGCGATAGATTTAGCAGTAGTTGCGG
CTATTTTATCATCTAATCAAGATATGGCAATAAACCCGAATGTTTGCTTTGCCGCCGAGGTTGGTTTAGCGGGTGAAATT
CGCCCTGTATCAAAAATAGATCAACGAATTACAGAAGCAGAAAAATTAGGATATAAAAGTTTTGTAACATCAAAATACAA
CAAAATAACAAGTAAAAATCATTCTATAAAACTAGTTTTAGTAAGTAAAATAGAAGAAGCTTTTGCAACTTTGTTTGCTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

47.93

100

0.486
  radA Streptococcus mitis NCTC 12261

47.93

100

0.486
  radA Streptococcus mitis SK321

47.93

100

0.486
  radA Streptococcus pneumoniae TIGR4

47.93

100

0.486
  radA Streptococcus pneumoniae D39

47.93

100

0.486
  radA Streptococcus pneumoniae R6

47.93

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

47.797

100

0.479

Multiple sequence alignment