Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACKWRP_RS22825 Genome accession   NZ_OZ205032
Coordinates   4397480..4398523 (-) Length   347 a.a.
NCBI ID   WP_001013194.1    Uniprot ID   -
Organism   Bacillus cereus biovar anthracis isolate BcbvaCA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4392480..4403523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWRP_RS22780 - 4392908..4393108 (-) 201 WP_000106084.1 YqzE family protein -
  ACKWRP_RS22785 aroK 4393147..4393644 (-) 498 WP_000836639.1 shikimate kinase AroK -
  ACKWRP_RS22790 - 4393764..4394414 (-) 651 WP_000183882.1 2OG-Fe(II) oxygenase -
  ACKWRP_RS22795 comGG 4394590..4394961 (-) 372 WP_001231185.1 competence type IV pilus minor pilin ComGG -
  ACKWRP_RS22800 comGF 4394958..4395428 (-) 471 WP_000923093.1 competence type IV pilus minor pilin ComGF -
  ACKWRP_RS22805 comGE 4395398..4395700 (-) 303 WP_000229990.1 competence type IV pilus minor pilin ComGE -
  ACKWRP_RS22810 comGD 4395693..4396148 (-) 456 WP_000810395.1 comG operon protein ComGD -
  ACKWRP_RS22815 comGC 4396145..4396444 (-) 300 WP_001178696.1 comG operon protein ComGC -
  ACKWRP_RS22820 comGB 4396456..4397487 (-) 1032 WP_000471914.1 comG operon protein ComGB -
  ACKWRP_RS22825 comGA 4397480..4398523 (-) 1044 WP_001013194.1 competence protein ComGA Machinery gene
  ACKWRP_RS22830 - 4398729..4399424 (+) 696 WP_000434117.1 helix-turn-helix transcriptional regulator -
  ACKWRP_RS22835 - 4399550..4399792 (+) 243 WP_000440711.1 DUF2626 domain-containing protein -
  ACKWRP_RS22840 - 4399900..4401294 (+) 1395 WP_410254893.1 L-cystine transporter -
  ACKWRP_RS22845 - 4401511..4401726 (-) 216 WP_001008320.1 DUF3912 family protein -
  ACKWRP_RS22850 - 4401980..4402291 (+) 312 WP_001093243.1 hypothetical protein -
  ACKWRP_RS22855 - 4402328..4402816 (-) 489 WP_000764253.1 hypothetical protein -
  ACKWRP_RS22860 - 4402896..4403270 (-) 375 WP_001012352.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39407.95 Da        Isoelectric Point: 9.2320

>NTDB_id=1169875 ACKWRP_RS22825 WP_001013194.1 4397480..4398523(-) (comGA) [Bacillus cereus biovar anthracis isolate BcbvaCA]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGTILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1169875 ACKWRP_RS22825 WP_001013194.1 4397480..4398523(-) (comGA) [Bacillus cereus biovar anthracis isolate BcbvaCA]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAACCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGACGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.637

100

0.576
  pilB Vibrio campbellii strain DS40M4

36.544

100

0.372

Multiple sequence alignment