Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACKWRP_RS11780 Genome accession   NZ_OZ205032
Coordinates   2277995..2278282 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus biovar anthracis isolate BcbvaCA     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2272995..2283282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWRP_RS11760 - 2274169..2274366 (+) 198 WP_001048092.1 DUF4083 domain-containing protein -
  ACKWRP_RS11765 - 2274398..2274861 (+) 464 Protein_2245 NUDIX hydrolase -
  ACKWRP_RS11770 nadE 2274908..2275726 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  ACKWRP_RS11775 - 2275998..2277878 (+) 1881 WP_001025964.1 FtsX-like permease family protein -
  ACKWRP_RS11780 abrB 2277995..2278282 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACKWRP_RS11785 - 2278557..2279507 (+) 951 WP_001089035.1 serine protease -
  ACKWRP_RS11790 - 2279548..2279856 (-) 309 WP_001259897.1 ArsR/SmtB family transcription factor -
  ACKWRP_RS11795 - 2279965..2280900 (+) 936 WP_000877936.1 aldo/keto reductase -
  ACKWRP_RS11800 - 2280949..2282124 (+) 1176 WP_041183861.1 MFS transporter -
  ACKWRP_RS11805 - 2282313..2282537 (-) 225 WP_000162601.1 hypothetical protein -
  ACKWRP_RS11810 - 2282622..2282969 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=1169863 ACKWRP_RS11780 WP_000648331.1 2277995..2278282(+) (abrB) [Bacillus cereus biovar anthracis isolate BcbvaCA]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1169863 ACKWRP_RS11780 WP_000648331.1 2277995..2278282(+) (abrB) [Bacillus cereus biovar anthracis isolate BcbvaCA]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment