Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACKWRP_RS09925 Genome accession   NZ_OZ205032
Coordinates   1905441..1906043 (-) Length   200 a.a.
NCBI ID   WP_000155594.1    Uniprot ID   Q81SS2
Organism   Bacillus cereus biovar anthracis isolate BcbvaCA     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1900441..1911043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWRP_RS09905 dnaD 1900835..1901542 (+) 708 WP_000728540.1 DNA replication protein DnaD -
  ACKWRP_RS09910 nth 1901558..1902205 (+) 648 WP_000933025.1 endonuclease III -
  ACKWRP_RS09915 - 1902209..1902727 (+) 519 WP_000442688.1 YpoC family protein -
  ACKWRP_RS09920 - 1902751..1905375 (-) 2625 WP_001283121.1 PBP1A family penicillin-binding protein -
  ACKWRP_RS09925 recU 1905441..1906043 (-) 603 WP_000155594.1 Holliday junction resolvase RecU Machinery gene
  ACKWRP_RS09930 - 1906147..1907172 (+) 1026 WP_410254742.1 DUF2515 domain-containing protein -
  ACKWRP_RS09935 - 1907296..1907472 (-) 177 WP_001982922.1 hypothetical protein -
  ACKWRP_RS09940 - 1907558..1907800 (+) 243 WP_001252043.1 hypothetical protein -
  ACKWRP_RS09945 - 1907816..1908160 (+) 345 WP_000872960.1 YppE family protein -
  ACKWRP_RS09950 - 1908187..1908378 (-) 192 WP_000242663.1 YppF family protein -
  ACKWRP_RS09955 - 1908556..1909035 (+) 480 WP_000487704.1 YppG family protein -
  ACKWRP_RS09960 - 1909191..1909616 (+) 426 WP_000546265.1 CotD family spore coat protein -
  ACKWRP_RS09965 - 1909673..1910227 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  ACKWRP_RS09970 gpsB 1910325..1910663 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5601

>NTDB_id=1169862 ACKWRP_RS09925 WP_000155594.1 1905441..1906043(-) (recU) [Bacillus cereus biovar anthracis isolate BcbvaCA]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIITFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1169862 ACKWRP_RS09925 WP_000155594.1 1905441..1906043(-) (recU) [Bacillus cereus biovar anthracis isolate BcbvaCA]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACCTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAGGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTACATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81SS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment