Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACKWRP_RS08590 Genome accession   NZ_OZ205032
Coordinates   1659880..1660203 (-) Length   107 a.a.
NCBI ID   WP_000578883.1    Uniprot ID   A0A150B540
Organism   Bacillus cereus biovar anthracis isolate BcbvaCA     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654880..1665203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWRP_RS08565 - 1655158..1656444 (+) 1287 WP_000247001.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ACKWRP_RS08570 sipW 1656639..1657208 (+) 570 WP_000767813.1 signal peptidase I SipW -
  ACKWRP_RS08575 - 1657269..1657859 (+) 591 WP_000172842.1 TasA family protein -
  ACKWRP_RS08580 - 1658015..1658788 (+) 774 WP_000917475.1 DUF4047 domain-containing protein -
  ACKWRP_RS08585 calY 1659211..1659804 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  ACKWRP_RS08590 sinR 1659880..1660203 (-) 324 WP_000578883.1 helix-turn-helix domain-containing protein Regulator
  ACKWRP_RS08595 - 1660283..1660417 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  ACKWRP_RS08600 inhA1 1660761..1663148 (+) 2388 WP_410254737.1 M6 family metalloprotease immune inhibitor InhA1 -
  ACKWRP_RS08605 - 1663320..1664687 (+) 1368 WP_000116801.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12358.20 Da        Isoelectric Point: 9.6248

>NTDB_id=1169860 ACKWRP_RS08590 WP_000578883.1 1659880..1660203(-) (sinR) [Bacillus cereus biovar anthracis isolate BcbvaCA]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1169860 ACKWRP_RS08590 WP_000578883.1 1659880..1660203(-) (sinR) [Bacillus cereus biovar anthracis isolate BcbvaCA]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B540

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment