Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACKWRP_RS08185 Genome accession   NZ_OZ205032
Coordinates   1588472..1590298 (+) Length   608 a.a.
NCBI ID   WP_000003400.1    Uniprot ID   -
Organism   Bacillus cereus biovar anthracis isolate BcbvaCA     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583472..1595298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWRP_RS08165 - 1583793..1584467 (-) 675 WP_000362620.1 TerC family protein -
  ACKWRP_RS08170 mecA 1584794..1585477 (+) 684 WP_000350710.1 adaptor protein MecA Regulator
  ACKWRP_RS08175 - 1585550..1587094 (+) 1545 WP_000799204.1 cardiolipin synthase -
  ACKWRP_RS08180 - 1587176..1588421 (+) 1246 Protein_1532 competence protein CoiA -
  ACKWRP_RS08185 pepF 1588472..1590298 (+) 1827 WP_000003400.1 oligoendopeptidase F Regulator
  ACKWRP_RS08190 - 1590418..1590591 (-) 174 WP_000754593.1 hypothetical protein -
  ACKWRP_RS08195 - 1590821..1591715 (-) 895 Protein_1535 ClpXP adapter SpxH family protein -
  ACKWRP_RS08200 - 1591715..1592113 (-) 399 WP_000043381.1 hypothetical protein -
  ACKWRP_RS08205 - 1592294..1592872 (-) 579 WP_000191105.1 CYTH domain-containing protein -
  ACKWRP_RS08210 - 1593019..1593390 (+) 372 WP_001180009.1 hypothetical protein -
  ACKWRP_RS08215 - 1593421..1594059 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  ACKWRP_RS08220 - 1594078..1594875 (+) 798 WP_000673194.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70261.57 Da        Isoelectric Point: 4.6929

>NTDB_id=1169859 ACKWRP_RS08185 WP_000003400.1 1588472..1590298(+) (pepF) [Bacillus cereus biovar anthracis isolate BcbvaCA]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDTEWEKEFQGIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVGILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGNALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=1169859 ACKWRP_RS08185 WP_000003400.1 1588472..1590298(+) (pepF) [Bacillus cereus biovar anthracis isolate BcbvaCA]
ATGTCTGAACAAAATACAGCAAAAACATTACCAGATCGTAACGAGATTGAAGAATCAAGTACGTGGAGATTGGAAGATAT
TTTCCAAACGGATACAGAGTGGGAAAAAGAATTCCAAGGCATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTCGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGTTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAGATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCATTTAAAGCTGTATATGAAACGTATGGAAAATATAAGAATACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAATTTTAATGCGCGCGTTCGTAAATACGACTCTGCACGTCAAGCGGCATTAAGTAA
TAATAATATTCCTGAAGCAGTGTACGATCAACTTATTGAATCTGTAAATGATAATTTACACTTGTTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCGCTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAATCTTTACATGTACTTGGTGATGAGTATGTTGGTATTTTAAA
AGAAGCATATGAAAATCGTTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTATACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
CTGTAATGAGGCGTTGCTAAACGATTACTTATTAAAAACGACAGAAGATAAGAAAGAACGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTAATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCACGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACTGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGCTATATTAATGAGTTC
TTAAAGGCAGGAAGTTCGGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488

Multiple sequence alignment