Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AX25_RS22040 Genome accession   NZ_CP007172
Coordinates   1417175..1418866 (+) Length   563 a.a.
NCBI ID   WP_014092749.1    Uniprot ID   -
Organism   Listeria ivanovii WSLC3009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1412175..1423866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX25_RS22015 (AX25_07050) - 1412323..1413204 (+) 882 WP_014092746.1 polyprenyl synthetase family protein -
  AX25_RS22020 (AX25_07055) - 1413403..1413603 (+) 201 WP_003719639.1 cold-shock protein -
  AX25_RS22025 (AX25_07060) dxs 1413771..1415691 (+) 1921 Protein_1377 1-deoxy-D-xylulose-5-phosphate synthase -
  AX25_RS22030 (AX25_07065) - 1415688..1416512 (+) 825 WP_014092748.1 TlyA family RNA methyltransferase -
  AX25_RS22035 (AX25_07070) ahrC 1416703..1417152 (+) 450 WP_003719642.1 transcriptional regulator AhrC/ArgR -
  AX25_RS22040 (AX25_07075) recN 1417175..1418866 (+) 1692 WP_014092749.1 DNA repair protein RecN Machinery gene
  AX25_RS22045 (AX25_07080) - 1418996..1419865 (+) 870 WP_014092750.1 phosphate acyltransferase -
  AX25_RS22050 (AX25_07085) buk 1419998..1421065 (+) 1068 WP_014092751.1 butyrate kinase -
  AX25_RS22055 (AX25_07090) lpdA 1421080..1422507 (+) 1428 WP_014092752.1 dihydrolipoyl dehydrogenase -
  AX25_RS22060 (AX25_07095) - 1422532..1423527 (+) 996 WP_014092753.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63589.43 Da        Isoelectric Point: 5.2007

>NTDB_id=116985 AX25_RS22040 WP_014092749.1 1417175..1418866(+) (recN) [Listeria ivanovii WSLC3009]
MLQEMTIKNFAIIESLSLSFREGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRDA
LLEHGIDATDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQAKFKEYQSISKEWQNWTKNERELAQRLDMLRFQQKEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMDSAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIHYEQEISSEMEKLTDSESHVGHLETKLANLKAELTKQAAILTDIRKKAATTLEKQIKQELNQLYMEKAIFSVRFE
TEKMELTETGQDSIVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILTGDEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
ETY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=116985 AX25_RS22040 WP_014092749.1 1417175..1418866(+) (recN) [Listeria ivanovii WSLC3009]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTGTCTTTGAGTTTCAGGGAAGGGATGACAGTATT
AACGGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGGCGCGGCTCCACAGATT
TTATTCGTCACGGCGAAGAACGACTCGAATTACAAGGGCTATTTGCACTAGCAGAAGATAATTTGGCGTGCCGAGATGCG
CTTTTGGAACATGGAATAGATGCAACAGATGATATGGTTGTTTTAGAACGCAGCTTATTTCGGTCAGGTAAAAATAGTTG
TCGGATTAACGGCAAGTTGGTTACTACCGTGTTACTTCGTCAAATAGGTTCTAAATTAATTGATATCCATAGCCAACATG
AACACCAAGAACTAATGAATGAGGAATTCCATTTATCATTGCTAGATCGTTTTGCTGCTGATAAAATCAAACCAGCGTTA
ACGAAATACCAAGCGAAATTTAAAGAGTACCAATCCATTTCAAAAGAATGGCAAAATTGGACGAAAAATGAACGTGAACT
TGCGCAACGTCTTGATATGCTCCGTTTTCAACAAAAAGAAATCGAAAATGCTAATTTACAAGCCGGTGAAGAAGATCGTT
TACTAGAACAAAAAAATATTCTAGCTAATTTTGAAAAATTAAATGAAAACTTACAAGGTGCTTATACAGCCATTCAGGGT
GAGCCAGGTGGACTTGAGTTTATTGGAGAAGCGATGCGCCAGATGGATTCCGCTGCCAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCATCTAGTTATTATATGTTAGAAGATAGTATGAGCCAAATTAGGCAATCACTCGATCAATTAG
AGTTTCAACCAGAAGAACTTAACCAAATCGAATCACGCCTAAATGATCTCAACCAATTGAAACGCAAGTATGGCAAAACA
ATTGAAGATATCATTCACTACGAACAAGAAATTAGTAGTGAAATGGAGAAGTTAACAGATAGTGAGTCACATGTTGGTCA
CTTAGAAACCAAACTAGCCAACTTAAAGGCGGAACTTACAAAACAAGCAGCCATATTAACTGACATCCGTAAAAAGGCGG
CGACGACACTAGAAAAACAAATTAAACAAGAACTAAACCAACTTTATATGGAAAAAGCGATTTTTAGCGTTCGTTTTGAA
ACAGAAAAAATGGAATTGACAGAAACAGGACAAGATAGCATCGTTTTTTATATGTCTACCAACCCTGGCGAACCGTTAAA
ACCACTTGCGAAAATTGCTTCAGGTGGAGAATTGTCCCGGATGATGTTAGCTCTTAAAACCATTTTCTCTAGACACCAAG
GAATCACCTCAATTATTTTTGATGAAGTTGATACAGGTGTAAGTGGTCGTGTTGGTCAAGCGATTGCAGAGAAAATTTAT
GCTGTTTCCGTTGGCTCACAAGTTCTTTGCATCAGTCATTTGCCACAAGTTGCTGCAATGGCTAACCATCATTATTACAT
CACCAAAAAAGTTCAAAACAAACGTACAACGACTTCAGTTACTATCCTAACAGGTGATGAAAAAGTAGAAGAAATTAGCC
GAATGATTGCAGGGATTGAAGTGACAGAACTAACTAAACAACATGCAAAAGAAATGATCGAACAAGCGGAAAAAGTAAAA
GAAACTTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.083

100

0.533

Multiple sequence alignment