Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACKWRP_RS02140 Genome accession   NZ_OZ205032
Coordinates   431748..432875 (+) Length   375 a.a.
NCBI ID   WP_000470750.1    Uniprot ID   A0A2C3GXQ0
Organism   Bacillus cereus biovar anthracis isolate BcbvaCA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 426748..437875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWRP_RS02110 spoIIIJ 426794..427561 (-) 768 WP_000727746.1 YidC family membrane integrase SpoIIIJ -
  ACKWRP_RS02115 rnpA 427601..427960 (-) 360 WP_000726628.1 ribonuclease P protein component -
  ACKWRP_RS02120 rpmH 428037..428171 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  ACKWRP_RS02125 dnaA 428737..430077 (+) 1341 WP_000428022.1 chromosomal replication initiator protein DnaA -
  ACKWRP_RS02130 dnaN 430256..431395 (+) 1140 WP_001212527.1 DNA polymerase III subunit beta -
  ACKWRP_RS02135 yaaA 431523..431735 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  ACKWRP_RS02140 recF 431748..432875 (+) 1128 WP_000470750.1 DNA replication/repair protein RecF Machinery gene
  ACKWRP_RS02145 gyrB 432914..434836 (+) 1923 WP_000435987.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACKWRP_RS02150 gyrA 434925..437396 (+) 2472 WP_001282851.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43334.66 Da        Isoelectric Point: 6.7809

>NTDB_id=1169842 ACKWRP_RS02140 WP_000470750.1 431748..432875(+) (recF) [Bacillus cereus biovar anthracis isolate BcbvaCA]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=1169842 ACKWRP_RS02140 WP_000470750.1 431748..432875(+) (recF) [Bacillus cereus biovar anthracis isolate BcbvaCA]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCAAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C3GXQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment