Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACOERG_RS09215 Genome accession   NZ_OZ204848
Coordinates   1910611..1911240 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ST38 isolate 1697008     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905611..1916240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOERG_RS09195 (EB1697008_09240) ycbZ 1906001..1907761 (-) 1761 WP_000156479.1 AAA family ATPase -
  ACOERG_RS09200 (EB1697008_09245) matP 1907947..1908399 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACOERG_RS09205 (EB1697008_09250) ompA 1908474..1909526 (-) 1053 WP_000750418.1 porin OmpA -
  ACOERG_RS09210 (EB1697008_09255) sulA 1909883..1910392 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  ACOERG_RS09215 (EB1697008_09260) sxy/tfoX 1910611..1911240 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACOERG_RS09220 (EB1697008_09265) yccS 1911203..1913365 (-) 2163 WP_001550920.1 YccS family putative transporter -
  ACOERG_RS09225 (EB1697008_09270) yccF 1913375..1913821 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACOERG_RS09230 (EB1697008_09275) helD 1913944..1915998 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1169817 ACOERG_RS09215 WP_000839153.1 1910611..1911240(+) (sxy/tfoX) [Escherichia coli strain ST38 isolate 1697008]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1169817 ACOERG_RS09215 WP_000839153.1 1910611..1911240(+) (sxy/tfoX) [Escherichia coli strain ST38 isolate 1697008]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment