Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACK2UD_RS08110 Genome accession   NZ_OZ204251
Coordinates   1672886..1674682 (-) Length   598 a.a.
NCBI ID   WP_376838040.1    Uniprot ID   -
Organism   Bombilactobacillus bombi strain LMG 32930 isolate CCM 8440     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667886..1679682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2UD_RS08095 (LMG32930_01602) - 1668956..1669477 (-) 522 WP_118908992.1 GNAT family N-acetyltransferase -
  ACK2UD_RS08100 (LMG32930_01603) - 1669552..1670049 (-) 498 WP_118899845.1 hypothetical protein -
  ACK2UD_RS08105 (LMG32930_01604) - 1670342..1672840 (-) 2499 WP_376837700.1 excinuclease ABC subunit UvrA -
  ACK2UD_RS08110 (LMG32930_01605) pepF 1672886..1674682 (-) 1797 WP_376838040.1 oligoendopeptidase F Regulator
  ACK2UD_RS08115 (LMG32930_01606) - 1674756..1675256 (-) 501 WP_376837698.1 universal stress protein -
  ACK2UD_RS08120 (LMG32930_01607) - 1675398..1676204 (+) 807 WP_376837696.1 tyrosine-protein phosphatase -
  ACK2UD_RS08125 (LMG32930_01608) - 1676259..1677215 (-) 957 WP_376837694.1 ABC transporter permease -
  ACK2UD_RS08130 (LMG32930_01609) - 1677212..1678297 (-) 1086 WP_240366803.1 ABC transporter permease -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68476.67 Da        Isoelectric Point: 4.9745

>NTDB_id=1169812 ACK2UD_RS08110 WP_376838040.1 1672886..1674682(-) (pepF) [Bombilactobacillus bombi strain LMG 32930 isolate CCM 8440]
MQKLPTRAEVPVELTWDLTKIFINDQEFEDNLQQAIDSNQKITSIAGTLAQSASALKKGIDAVLALYRQVEKLAVYASMK
SDQDTANNHYQAYQTQVNSLLAQVDANVAFLEPEILAIPPEKLNKFKQDFQLQSYQHFLDMITINRNHVLDAQSEALLSA
AGDVMQTASNTFNVLDNSDLKFPVVTDEKGQQYQLSDGVYSRLLESGDQSVRQKAFMALYQMYGQFKNTFATTLAGEVKK
NNYLAQVHHYSSAREQAMSQNYIPTTVYDTLITEVNQHLDLLHRYVALRKQILNVSELHMYDMYTPLVGQPPLTYTFSSA
KQTAKQALAVLGADYLEHVDEIFNNRDIDVVENQGKVSGAYSGGSYDTAPYELLNWQDNLDNLYTLVHETGHSVHSWYTR
HYQPYMYGDYPIFIAEIASTTNENILTEYLLQTQTDPKVRAYVLNYYLDGFKGTIYRQTQFAQFEHFIHQADAQGKALTA
DYMSSYYEQLNARYYGNDVINDPQIAFEWTRIPHFYMNYYVYQYATGFAAASYLSSQIMQQKPHARDKYLHYLQTGSSEY
PIQIMQQAGVDMTKPDYLEAAFATFAQRLDELEKLLSK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=1169812 ACK2UD_RS08110 WP_376838040.1 1672886..1674682(-) (pepF) [Bombilactobacillus bombi strain LMG 32930 isolate CCM 8440]
ATTCAAAAACTGCCAACTCGCGCTGAAGTTCCAGTCGAATTAACTTGGGATTTAACTAAAATTTTTATTAATGATCAAGA
ATTTGAAGACAATTTGCAACAGGCAATAGATTCTAACCAGAAAATTACCAGCATTGCTGGAACTTTAGCACAATCAGCGT
CAGCTCTAAAGAAAGGGATAGATGCAGTATTAGCTTTATATCGGCAAGTAGAAAAATTAGCCGTTTATGCAAGTATGAAA
AGTGATCAAGACACTGCTAATAATCATTACCAAGCTTATCAAACTCAAGTTAATAGCTTATTAGCCCAAGTAGATGCCAA
TGTAGCATTTTTAGAGCCAGAAATTCTGGCAATTCCACCAGAAAAATTAAATAAGTTTAAACAAGATTTTCAATTGCAGA
GCTATCAACATTTTTTAGATATGATTACAATTAATCGCAATCACGTTTTAGATGCTCAAAGTGAGGCATTACTTTCAGCG
GCTGGTGATGTTATGCAGACCGCTAGTAACACTTTTAATGTGTTAGATAATTCAGATTTAAAATTTCCAGTGGTCACAGA
TGAAAAAGGGCAACAATATCAATTATCAGACGGTGTTTACAGTCGATTATTAGAGTCTGGAGATCAAAGTGTTCGCCAAA
AAGCATTTATGGCTTTGTATCAAATGTACGGTCAATTTAAAAATACTTTTGCCACGACTTTAGCCGGAGAAGTTAAAAAG
AATAATTATTTAGCACAAGTACATCATTATTCCAGCGCGCGTGAACAAGCAATGTCCCAAAATTATATTCCGACTACAGT
TTACGACACTCTGATTACGGAAGTTAATCAACACTTAGATTTACTCCATCGTTATGTTGCTTTACGCAAACAAATTTTGA
ATGTTTCAGAGTTGCATATGTATGATATGTATACCCCTTTAGTTGGTCAACCTCCTTTAACTTATACTTTTAGTAGTGCT
AAACAAACGGCTAAACAGGCTTTAGCCGTGTTGGGTGCAGATTATTTGGAACACGTCGATGAAATTTTTAATAATCGCGA
TATTGATGTGGTAGAGAATCAAGGTAAAGTTTCAGGAGCTTATTCAGGTGGTTCTTATGATACTGCACCCTATGAATTAT
TAAATTGGCAGGATAATTTGGACAATTTATATACATTAGTTCATGAAACCGGACATAGTGTGCATAGCTGGTATACTCGT
CACTATCAACCTTATATGTATGGTGATTATCCGATTTTTATCGCAGAAATTGCTTCCACAACTAATGAAAATATTTTGAC
AGAATATTTATTACAGACGCAAACAGATCCCAAAGTTCGCGCCTATGTTTTAAATTATTATTTAGATGGTTTTAAAGGTA
CCATTTATCGACAAACCCAATTTGCCCAATTTGAACATTTTATTCATCAGGCAGATGCTCAAGGTAAAGCCTTAACAGCA
GATTATATGTCTAGTTATTATGAGCAGTTAAATGCACGTTATTATGGTAATGATGTGATTAATGATCCGCAAATTGCGTT
CGAATGGACACGGATCCCACATTTTTATATGAATTATTATGTTTATCAATATGCGACTGGTTTTGCCGCCGCTTCATATC
TTAGTTCCCAGATTATGCAACAAAAGCCCCATGCACGTGACAAGTATCTCCATTATTTACAAACAGGAAGCTCAGAATAT
CCAATTCAAATTATGCAACAAGCAGGAGTAGATATGACGAAACCGGATTATTTAGAAGCTGCTTTTGCCACTTTTGCCCA
AAGATTAGATGAATTAGAAAAGTTACTTAGCAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

99.164

0.507

Multiple sequence alignment