Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   ACH8EH_RS02090 Genome accession   NZ_OZ197914
Coordinates   397568..398179 (+) Length   203 a.a.
NCBI ID   WP_395373033.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-24-002     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392568..403179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EH_RS02065 - 392894..393475 (-) 582 WP_003698180.1 superoxide dismutase -
  ACH8EH_RS02070 dnaB 393638..395044 (+) 1407 WP_047926755.1 replicative DNA helicase -
  ACH8EH_RS02075 pilH 395352..396017 (+) 666 WP_047926672.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACH8EH_RS02080 pilI 396049..396657 (+) 609 WP_169577276.1 type IV pilus modification protein PilV Machinery gene
  ACH8EH_RS02085 pilJ 396654..397589 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  ACH8EH_RS02090 pilK 397568..398179 (+) 612 WP_395373033.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACH8EH_RS02095 pilL 398181..398654 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  ACH8EH_RS02100 - 398724..399032 (-) 309 WP_010359926.1 AzlD family protein -
  ACH8EH_RS02105 - 399029..399739 (-) 711 Protein_411 AzlC family ABC transporter permease -
  ACH8EH_RS02110 dut 399905..400357 (+) 453 WP_010359930.1 dUTP diphosphatase -
  ACH8EH_RS02115 dapC 400435..401622 (+) 1188 WP_235270334.1 succinyldiaminopimelate transaminase -
  ACH8EH_RS02120 yaaA 401778..402557 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22098.07 Da        Isoelectric Point: 8.0862

>NTDB_id=1169755 ACH8EH_RS02090 WP_395373033.1 397568..398179(+) (pilK) [Neisseria gonorrhoeae isolate SGC-24-002]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGMEYNKGTAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1169755 ACH8EH_RS02090 WP_395373033.1 397568..398179(+) (pilK) [Neisseria gonorrhoeae isolate SGC-24-002]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATCAGGGAATGGAATATAACAAAGGCACGGCAGGCGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.926

Multiple sequence alignment