Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACH8EH_RS00235 Genome accession   NZ_OZ197914
Coordinates   52305..52904 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae isolate SGC-24-002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47305..57904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EH_RS00220 pilQ 48880..51075 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  ACH8EH_RS00225 pilP 51094..51639 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  ACH8EH_RS00230 - 51657..52304 (-) 648 WP_047922703.1 type 4a pilus biogenesis protein PilO -
  ACH8EH_RS00235 pilN 52305..52904 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  ACH8EH_RS00240 pilM 52907..54022 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  ACH8EH_RS00245 - 54174..56570 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  ACH8EH_RS00250 yihA 56690..57319 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=1169743 ACH8EH_RS00235 WP_003687354.1 52305..52904(-) (pilN) [Neisseria gonorrhoeae isolate SGC-24-002]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1169743 ACH8EH_RS00235 WP_003687354.1 52305..52904(-) (pilN) [Neisseria gonorrhoeae isolate SGC-24-002]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment