Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | ACH8EK_RS05430 | Genome accession | NZ_OZ197910 |
| Coordinates | 1035141..1036886 (+) | Length | 581 a.a. |
| NCBI ID | WP_047920976.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae isolate SGC-24-001 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 999966..1074767 | 1035141..1036886 | within | 0 |
| IS/Tn | 1037573..1038574 | 1035141..1036886 | flank | 687 |
Gene organization within MGE regions
Location: 999966..1074767
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH8EK_RS05260 | - | 999966..1001036 (-) | 1071 | WP_003695318.1 | integrase arm-type DNA-binding domain-containing protein | - |
| ACH8EK_RS05265 | - | 1001245..1002024 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| ACH8EK_RS05270 | - | 1002616..1002825 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| ACH8EK_RS05275 | dinB | 1002924..1003982 (+) | 1059 | WP_041421282.1 | DNA polymerase IV | - |
| ACH8EK_RS05280 | rep | 1004052..1006067 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| ACH8EK_RS05285 | aroD | 1006087..1006851 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| ACH8EK_RS05290 | recA | 1007051..1008097 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| ACH8EK_RS05295 | - | 1008752..1009087 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| ACH8EK_RS05300 | dnaX | 1009168..1011291 (-) | 2124 | WP_003691207.1 | DNA polymerase III subunit gamma/tau | - |
| ACH8EK_RS05305 | mutL | 1011386..1013350 (-) | 1965 | WP_003697109.1 | DNA mismatch repair endonuclease MutL | - |
| ACH8EK_RS05310 | - | 1013494..1013679 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| ACH8EK_RS05315 | - | 1013690..1014358 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| ACH8EK_RS05320 | - | 1014358..1015071 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| ACH8EK_RS05325 | purE | 1015119..1015604 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| ACH8EK_RS05330 | - | 1015816..1016681 (-) | 866 | Protein_1046 | transposase | - |
| ACH8EK_RS05335 | - | 1016998..1017363 (+) | 366 | Protein_1047 | transposase | - |
| ACH8EK_RS05340 | - | 1017370..1018395 (+) | 1026 | Protein_1048 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| ACH8EK_RS05345 | - | 1018590..1019246 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| ACH8EK_RS05350 | - | 1019243..1021012 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| ACH8EK_RS05355 | - | 1021219..1021833 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| ACH8EK_RS05360 | - | 1021996..1022613 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| ACH8EK_RS05365 | - | 1022621..1023484 (+) | 864 | WP_003688678.1 | ATP-binding protein | - |
| ACH8EK_RS05370 | - | 1023497..1023931 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| ACH8EK_RS05375 | rpe | 1024077..1024760 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| ACH8EK_RS05380 | ruvB | 1025005..1026036 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| ACH8EK_RS05385 | - | 1026118..1026426 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| ACH8EK_RS05390 | - | 1026845..1028077 (-) | 1233 | WP_003688669.1 | multifunctional CCA addition/repair protein | - |
| ACH8EK_RS05395 | - | 1028156..1029784 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| ACH8EK_RS05400 | - | 1029934..1030308 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| ACH8EK_RS05405 | - | 1030357..1031895 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| ACH8EK_RS05410 | recR | 1031962..1032579 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| ACH8EK_RS05415 | - | 1032635..1032913 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| ACH8EK_RS05420 | - | 1033139..1034386 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| ACH8EK_RS05425 | lolD | 1034379..1035074 (+) | 696 | WP_395373238.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| ACH8EK_RS05430 | recD | 1035141..1036886 (+) | 1746 | WP_047920976.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| ACH8EK_RS05435 | - | 1036958..1037604 (-) | 647 | Protein_1067 | methyltransferase | - |
| ACH8EK_RS05440 | - | 1037612..1038574 (+) | 963 | WP_050303398.1 | IS110 family transposase | - |
| ACH8EK_RS05445 | - | 1038703..1039162 (-) | 460 | Protein_1069 | methyltransferase | - |
| ACH8EK_RS05450 | lon | 1039414..1041876 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| ACH8EK_RS05455 | - | 1042058..1042327 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| ACH8EK_RS05460 | - | 1042503..1042937 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| ACH8EK_RS05465 | - | 1042930..1044237 (-) | 1308 | WP_003702721.1 | homoserine dehydrogenase | - |
| ACH8EK_RS05470 | - | 1044433..1044804 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| ACH8EK_RS05475 | - | 1044881..1046803 (+) | 1923 | WP_047922588.1 | ATP-binding cassette domain-containing protein | - |
| ACH8EK_RS05480 | - | 1046790..1047185 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| ACH8EK_RS05485 | - | 1047276..1047788 (+) | 513 | WP_395373245.1 | hypothetical protein | - |
| ACH8EK_RS05490 | - | 1048233..1048928 (-) | 696 | WP_041421278.1 | DUF4400 domain-containing protein | - |
| ACH8EK_RS05495 | traD | 1048918..1050960 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| ACH8EK_RS05500 | mobH | 1050957..1053509 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| ACH8EK_RS05505 | - | 1053506..1053925 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| ACH8EK_RS05510 | - | 1054437..1054898 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| ACH8EK_RS05515 | - | 1054868..1055389 (+) | 522 | WP_395373251.1 | OmpA family protein | - |
| ACH8EK_RS05520 | traA | 1055445..1055741 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| ACH8EK_RS05525 | traL | 1055763..1056044 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| ACH8EK_RS05530 | - | 1056041..1056706 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| ACH8EK_RS05535 | - | 1056708..1057442 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| ACH8EK_RS05540 | - | 1057444..1058757 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| ACH8EK_RS05545 | - | 1058767..1059486 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| ACH8EK_RS05550 | - | 1059483..1060064 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| ACH8EK_RS05555 | - | 1060074..1062386 (+) | 2313 | WP_395373258.1 | TraC family protein | - |
| ACH8EK_RS05560 | - | 1062414..1062962 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| ACH8EK_RS05565 | - | 1062962..1063507 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| ACH8EK_RS05570 | - | 1063516..1064172 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| ACH8EK_RS05575 | - | 1064169..1065287 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| ACH8EK_RS05580 | trbC | 1065302..1066054 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ACH8EK_RS05585 | - | 1066051..1067295 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| ACH8EK_RS05590 | traN | 1067319..1068875 (+) | 1557 | WP_229684969.1 | conjugal transfer protein TraN | - |
| ACH8EK_RS05595 | - | 1068862..1069287 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| ACH8EK_RS05600 | - | 1069299..1070075 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| ACH8EK_RS05605 | - | 1070247..1071758 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| ACH8EK_RS05610 | - | 1071765..1074767 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63113.87 Da Isoelectric Point: 5.8825
>NTDB_id=1169723 ACH8EK_RS05430 WP_047920976.1 1035141..1036886(+) (recD) [Neisseria gonorrhoeae isolate SGC-24-001]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRSINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRSINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=1169723 ACH8EK_RS05430 WP_047920976.1 1035141..1036886(+) (recD) [Neisseria gonorrhoeae isolate SGC-24-001]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTTCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTTCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |