Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACH8EK_RS01945 Genome accession   NZ_OZ197910
Coordinates   371602..372147 (-) Length   181 a.a.
NCBI ID   WP_003692554.1    Uniprot ID   Q5FAD1
Organism   Neisseria gonorrhoeae isolate SGC-24-001     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366602..377147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EK_RS01935 - 367608..368120 (-) 513 WP_003687349.1 shikimate kinase -
  ACH8EK_RS01940 pilQ 369388..371583 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  ACH8EK_RS01945 pilP 371602..372147 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  ACH8EK_RS01950 - 372165..372812 (-) 648 WP_047922703.1 type 4a pilus biogenesis protein PilO -
  ACH8EK_RS01955 pilN 372813..373412 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  ACH8EK_RS01960 pilM 373415..374530 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  ACH8EK_RS01965 - 374682..377078 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20094.62 Da        Isoelectric Point: 4.7529

>NTDB_id=1169702 ACH8EK_RS01945 WP_003692554.1 371602..372147(-) (pilP) [Neisseria gonorrhoeae isolate SGC-24-001]
MKHYALLISFLALSACSQNSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1169702 ACH8EK_RS01945 WP_003692554.1 371602..372147(-) (pilP) [Neisseria gonorrhoeae isolate SGC-24-001]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAATTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5FAD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983

Multiple sequence alignment