Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACNUEE_RS13885 Genome accession   NZ_OZ197100
Coordinates   2891522..2892151 (+) Length   209 a.a.
NCBI ID   WP_039060827.1    Uniprot ID   -
Organism   Escherichia coli isolate 23S01245-7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2886522..2897151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEE_RS13865 ycbZ 2886912..2888672 (-) 1761 WP_047669284.1 AAA family ATPase -
  ACNUEE_RS13870 matP 2888858..2889310 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACNUEE_RS13875 ompA 2889387..2890437 (-) 1051 Protein_2696 porin OmpA -
  ACNUEE_RS13880 sulA 2890794..2891303 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACNUEE_RS13885 sxy/tfoX 2891522..2892151 (+) 630 WP_039060827.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACNUEE_RS13890 yccS 2892114..2894276 (-) 2163 WP_000323868.1 YccS family putative transporter -
  ACNUEE_RS13895 yccF 2894286..2894732 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACNUEE_RS13900 helD 2894855..2896909 (+) 2055 WP_089620851.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24175.07 Da        Isoelectric Point: 9.2180

>NTDB_id=1169596 ACNUEE_RS13885 WP_039060827.1 2891522..2892151(+) (sxy/tfoX) [Escherichia coli isolate 23S01245-7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFVMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1169596 ACNUEE_RS13885 WP_039060827.1 2891522..2892151(+) (sxy/tfoX) [Escherichia coli isolate 23S01245-7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGTGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCACT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTTCGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTCGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment