Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACNUEH_RS12115 Genome accession   NZ_OZ197095
Coordinates   2528318..2529019 (+) Length   233 a.a.
NCBI ID   WP_416631595.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523318..2534019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS12080 kdsB 2523841..2524602 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACNUEH_RS12085 - 2524614..2525594 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ACNUEH_RS12090 - 2525606..2525947 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  ACNUEH_RS12095 - 2525965..2526738 (+) 774 WP_000497298.1 TatD family hydrolase -
  ACNUEH_RS12100 - 2526776..2527384 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ACNUEH_RS12105 - 2527394..2527948 (+) 555 WP_000841374.1 type II secretion system protein -
  ACNUEH_RS12110 xcpV 2527938..2528318 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACNUEH_RS12115 xcpW 2528318..2529019 (+) 702 WP_416631595.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACNUEH_RS12120 gspK 2529019..2529978 (+) 960 WP_000301468.1 type II secretion system minor pseudopilin GspK -
  ACNUEH_RS12125 - 2530208..2530804 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  ACNUEH_RS12130 ung 2530855..2531568 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  ACNUEH_RS12135 - 2531565..2532689 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ACNUEH_RS12140 tadA 2532696..2533199 (+) 504 WP_031949880.1 tRNA adenosine(34) deaminase TadA -
  ACNUEH_RS12145 - 2533269..2533712 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26638.59 Da        Isoelectric Point: 9.5501

>NTDB_id=1169459 ACNUEH_RS12115 WP_416631595.1 2528318..2529019(+) (xcpW) [Acinetobacter baumannii isolate 23S01404-6]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEINNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1169459 ACNUEH_RS12115 WP_416631595.1 2528318..2529019(+) (xcpW) [Acinetobacter baumannii isolate 23S01404-6]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATTGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGACACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCAATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment