Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ACNUD1_RS14810 Genome accession   NZ_OZ197094
Coordinates   2930056..2930772 (-) Length   238 a.a.
NCBI ID   WP_064137750.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00076-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2925056..2935772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD1_RS14795 - 2926145..2927095 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  ACNUD1_RS14800 - 2927244..2928728 (+) 1485 WP_000141407.1 sucrose-6-phosphate hydrolase -
  ACNUD1_RS14805 - 2928725..2929684 (+) 960 WP_001253294.1 carbohydrate kinase family protein -
  ACNUD1_RS14810 agrA 2930056..2930772 (-) 717 WP_064137750.1 quorum-sensing response regulator AgrA Regulator
  ACNUD1_RS14815 agrC 2930791..2932083 (-) 1293 WP_001825886.1 quorum-sensing sensor histidine kinase AgrC -
  ACNUD1_RS14820 agrD 2932108..2932248 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  ACNUD1_RS14825 agrB 2932245..2932814 (-) 570 WP_001105708.1 accessory gene regulator AgrB -
  ACNUD1_RS14830 hld 2933104..2933184 (+) 81 WP_000046022.1 delta-hemolysin -
  ACNUD1_RS14835 - 2933785..2934570 (-) 786 WP_000867947.1 carbon-nitrogen family hydrolase -
  ACNUD1_RS14840 - 2934878..2935504 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27965.94 Da        Isoelectric Point: 6.0935

>NTDB_id=1169421 ACNUD1_RS14810 WP_064137750.1 2930056..2930772(-) (agrA) [Staphylococcus aureus isolate 23S00076-1]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGYYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1169421 ACNUD1_RS14810 WP_064137750.1 2930056..2930772(-) (agrA) [Staphylococcus aureus isolate 23S00076-1]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTATTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment