Detailed information NTG1169303

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ACNUDV_RS01980
• Genome accession: NZ_OZ197092
• Coordinates: 388153..388599 (+)
• Length: 148 a.a.
• NCBI ID: WP_001796473.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate 23S00050-1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	389491..390662	388153..388599	flank	892

Gene organization within MGE regions

Location: 388153..390662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNUDV_RS01980	comGD	388153..388599 (+)	447	WP_001796473.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACNUDV_RS01985	comGE	388586..388885 (+)	300	WP_000844413.1	hypothetical protein	Machinery gene
ACNUDV_RS01990	comGF	388803..389300 (+)	498	WP_001825340.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACNUDV_RS01995	-	389491..390662 (+)	1172	Protein_395	IS256-like element IS256 family transposase	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17131.31 Da
• Isoelectric Point: 10.3312

>NTDB_id=1169303 ACNUDV_RS01980 WP_001796473.1 388153..388599(+) (comGD) [Staphylococcus aureus isolate 23S00050-1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1169303 ACNUDV_RS01980 WP_001796473.1 388153..388599(+) (comGD) [Staphylococcus aureus isolate 23S00050-1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993