Detailed information NTG1168611

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACFY5O_RS03610
• Genome accession: NZ_OZ186757
• Coordinates: 740770..742134 (+)
• Length: 454 a.a.
• NCBI ID: WP_022038596.1
• Uniprot ID: -
• Organism: Mediterraneibacter gnavus isolate LUMC_Rgna_QRD032
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 735770..747134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFY5O_RS03590	dapF	736371..737228 (+)	858	WP_022038593.1	diaminopimelate epimerase	-
ACFY5O_RS03595	-	737340..737708 (+)	369	WP_004841688.1	GntR family transcriptional regulator	-
ACFY5O_RS03600	-	737721..740162 (+)	2442	WP_173901107.1	ATP-dependent Clp protease ATP-binding subunit	-
ACFY5O_RS03605	-	740263..740676 (+)	414	WP_022038595.1	hypothetical protein	-
ACFY5O_RS03610	radA	740770..742134 (+)	1365	WP_022038596.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49473.45 Da
• Isoelectric Point: 7.5314

>NTDB_id=1168611 ACFY5O_RS03610 WP_022038596.1 740770..742134(+) (radA) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD032]
MAKGKKSIFFCQNCGHEEAKWLGQCPVCKEWNTFAEEKVSAGLSRGTTAAAKQSKTAEVVPLSQISARDDTRMLTGMKEL
DRVLGGGIVSGSLVLVGGDPGIGKSTLLLQVCQRLSASRKILYISGEESQTQIKLRANRMGSFTDHMLLLCETNLDTIRT
AIERQNPELVIIDSIQTMYNEEVSSAPGSVSQVRESTHVLMQLAKGMGIPIFIVGHVTKEGTVAGPRVLEHMVDTVLYFE
GDRHASYRILRAVKNRFGSTNEIGVFEMRREGLVEVENPSEYMLSGKPENASGSVVACSMEGTRPILIEIQALVCQSNFG
MPRRTAAGTDYNRVNLLMAVLEKRIGLPLSNYDAYVNIAGGIKMNEPAIDLGIIMALVSSYKNRAIDEKMIVFGEVGLSG
EVRAVSMPEQRVAEAKKLGFEICILPKVCLDMVKEIKGIKLLGVGNISDAINLL

Nucleotide

• Length: 1365 bp

>NTDB_id=1168611 ACFY5O_RS03610 WP_022038596.1 740770..742134(+) (radA) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD032]
ATGGCAAAAGGAAAGAAAAGTATTTTTTTCTGTCAGAATTGCGGACATGAAGAGGCAAAATGGCTGGGGCAATGTCCGGT
TTGTAAAGAATGGAATACATTCGCAGAAGAAAAAGTGAGTGCCGGATTGAGCCGCGGGACAACGGCAGCTGCAAAGCAGA
GTAAAACAGCAGAAGTAGTTCCGCTTTCTCAGATCAGTGCCAGGGATGATACCAGGATGCTGACCGGGATGAAAGAACTG
GATCGGGTGCTTGGAGGAGGTATCGTCTCCGGTTCTCTCGTTCTGGTCGGAGGGGACCCGGGGATTGGAAAATCAACCCT
GTTATTGCAAGTGTGTCAGAGGCTGTCGGCATCAAGAAAAATTTTATATATTTCAGGAGAGGAGTCGCAGACTCAGATCA
AATTGCGTGCAAATCGTATGGGAAGTTTTACAGATCATATGCTGTTGTTATGTGAAACAAATCTGGATACCATACGTACT
GCCATTGAGAGGCAAAATCCGGAGCTTGTGATCATTGATTCGATTCAAACGATGTACAATGAAGAAGTATCCTCAGCGCC
GGGAAGTGTTTCGCAGGTAAGAGAATCTACCCATGTGCTGATGCAGCTGGCAAAGGGGATGGGGATTCCAATCTTTATTG
TTGGACATGTGACAAAAGAGGGGACTGTGGCAGGTCCGAGAGTGCTGGAACATATGGTGGATACGGTACTTTATTTTGAG
GGAGACAGACATGCTTCCTATCGGATTCTGCGTGCAGTAAAAAACCGTTTTGGTTCTACCAACGAGATCGGTGTGTTTGA
AATGCGAAGAGAAGGACTGGTAGAAGTGGAAAACCCCTCCGAATATATGCTGAGCGGAAAGCCGGAAAATGCATCTGGTT
CTGTTGTGGCATGCTCTATGGAAGGAACACGTCCGATTCTGATCGAGATTCAGGCGCTGGTCTGCCAGAGTAACTTCGGA
ATGCCAAGAAGAACGGCAGCAGGAACGGATTATAATCGTGTAAATCTTCTGATGGCGGTACTGGAAAAAAGGATTGGACT
GCCGTTGTCAAATTATGATGCCTATGTCAACATTGCCGGAGGGATTAAAATGAATGAACCAGCGATTGATCTGGGAATCA
TCATGGCGCTGGTTTCCAGTTACAAGAACCGGGCGATCGATGAAAAGATGATCGTATTTGGAGAAGTTGGATTAAGCGGA
GAGGTGCGTGCAGTCAGTATGCCAGAACAGCGAGTGGCAGAGGCTAAAAAACTGGGATTTGAGATCTGTATCCTTCCCAA
AGTATGTCTGGATATGGTAAAAGAAATCAAAGGGATCAAACTACTGGGGGTAGGAAATATCAGTGATGCGATAAACCTTT
TGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (345-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• AAA domain (AAA_25) (70-221)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	56.512	99.78	0.564
radA	Streptococcus mitis NCTC 12261	54.626	100	0.546
radA	Streptococcus pneumoniae Rx1	54.405	100	0.544
radA	Streptococcus pneumoniae D39	54.405	100	0.544
radA	Streptococcus pneumoniae R6	54.405	100	0.544
radA	Streptococcus pneumoniae TIGR4	54.405	100	0.544
radA	Streptococcus mitis SK321	54.185	100	0.542