Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   ACFCTL_RS10165 Genome accession   NZ_OZ182546
Coordinates   2224692..2225006 (-) Length   104 a.a.
NCBI ID   WP_014842047.1    Uniprot ID   -
Organism   Legionella pneumophila isolate ZIB8567     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2219692..2230006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS10140 - 2220117..2220617 (-) 501 WP_014842042.1 hypothetical protein -
  ACFCTL_RS10145 - 2221109..2221969 (+) 861 WP_014842043.1 polysaccharide deacetylase family protein -
  ACFCTL_RS10150 - 2222087..2223283 (-) 1197 WP_014842044.1 murein transglycosylase A -
  ACFCTL_RS10155 lpp1976 2223393..2223950 (-) 558 WP_014842045.1 hypothetical protein Machinery gene
  ACFCTL_RS10160 lpp1977 2223947..2224753 (-) 807 WP_061721627.1 PilW family protein Machinery gene
  ACFCTL_RS10165 lpp1978 2224692..2225006 (-) 315 WP_014842047.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACFCTL_RS10170 hisC 2225166..2226275 (+) 1110 WP_014842048.1 histidinol-phosphate transaminase -
  ACFCTL_RS10175 - 2226312..2226653 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  ACFCTL_RS10180 secF 2226845..2227762 (-) 918 WP_014842049.1 protein translocase subunit SecF -
  ACFCTL_RS10185 secD 2227775..2229631 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  ACFCTL_RS10190 yajC 2229653..2229988 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12293.40 Da        Isoelectric Point: 9.8344

>NTDB_id=1167996 ACFCTL_RS10165 WP_014842047.1 2224692..2225006(-) (lpp1978) [Legionella pneumophila isolate ZIB8567]
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYTLDAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=1167996 ACFCTL_RS10165 WP_014842047.1 2224692..2225006(-) (lpp1978) [Legionella pneumophila isolate ZIB8567]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGCTCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGTTCCTATACTCTGGATGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

97.115

100

0.971
  lpp1978 Legionella pneumophila str. Paris

95.192

100

0.952

Multiple sequence alignment