Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG47_RS00450 Genome accession   NZ_CP010169
Coordinates   83800..84315 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain H5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 78800..89315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG47_RS00425 (RG47_00405) ygaZ 79199..79936 (+) 738 WP_000445661.1 L-valine exporter subunit YgaZ -
  RG47_RS00430 (RG47_00410) ygaH 79926..80261 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG47_RS00435 (RG47_00415) emrR 80352..80882 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG47_RS00440 (RG47_00420) emrA 81009..82181 (+) 1173 WP_073464369.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG47_RS00445 (RG47_00425) emrB 82198..83736 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG47_RS00450 (RG47_00430) luxS 83800..84315 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG47_RS00455 (RG47_00435) gshA 84465..86021 (-) 1557 WP_000611812.1 glutamate--cysteine ligase -
  RG47_RS00460 (RG47_00440) yqaA 86094..86522 (-) 429 WP_001287454.1 YqaA family protein -
  RG47_RS00465 (RG47_00445) yqaB 86519..87085 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG47_RS00495 (RG47_00480) csrA 88544..88729 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=116795 RG47_RS00450 WP_001130211.1 83800..84315(-) (luxS) [Escherichia coli strain H5]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=116795 RG47_RS00450 WP_001130211.1 83800..84315(-) (luxS) [Escherichia coli strain H5]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment