Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLIIK_RS17535 Genome accession   NZ_OZ176236
Coordinates   3786430..3787791 (-) Length   453 a.a.
NCBI ID   WP_180098420.1    Uniprot ID   -
Organism   Achromobacter mucicolens isolate LjRoot1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3781430..3792791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIIK_RS17510 - 3781960..3782961 (+) 1002 WP_062840791.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ACLIIK_RS17515 - 3783037..3784008 (+) 972 WP_410365668.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ACLIIK_RS17520 - 3784139..3785095 (+) 957 WP_410365669.1 2-hydroxyacid dehydrogenase -
  ACLIIK_RS17525 - 3785257..3785475 (-) 219 WP_056324221.1 hypothetical protein -
  ACLIIK_RS17530 - 3785622..3786401 (-) 780 WP_410365670.1 sulfite exporter TauE/SafE family protein -
  ACLIIK_RS17535 radA 3786430..3787791 (-) 1362 WP_180098420.1 DNA repair protein RadA Machinery gene
  ACLIIK_RS17540 - 3788210..3788806 (+) 597 WP_410365671.1 hypothetical protein -
  ACLIIK_RS17545 hpaR 3788914..3789375 (+) 462 WP_056324211.1 homoprotocatechuate degradation operon regulator HpaR -
  ACLIIK_RS17550 hpaI 3789415..3790215 (+) 801 WP_410365672.1 4-hydroxy-2-oxoheptanedioate aldolase -
  ACLIIK_RS17555 - 3790287..3791447 (-) 1161 Protein_3465 PepSY-associated TM helix domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48177.22 Da        Isoelectric Point: 6.9552

>NTDB_id=1167937 ACLIIK_RS17535 WP_180098420.1 3786430..3787791(-) (radA) [Achromobacter mucicolens isolate LjRoot1]
MAKTRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSAPAAASHRYAPLASSSPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALEKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1167937 ACLIIK_RS17535 WP_180098420.1 3786430..3787791(-) (radA) [Achromobacter mucicolens isolate LjRoot1]
ATGGCAAAAACCCGTACCGTTTATGTGTGCGCCGACTGTGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTTGAAGAAACGGTGGAGTCGTCCGCGCCCGCGGCGGCCTCGCACCGCTATGCGCCGCTGGCCT
CGTCCAGCCCGGTGCGCAGCCTGTCCGAAATCGAGGCCCGCGAAACGCCGCGCCAGCCCACCGGCCTGGACGAATTCGAT
CGCGTGCTCGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCT
CTTGCAGGCGCTGGCCTCGCTGTCCGAAACCACCAACGTGCTGTACGTGACGGGCGAAGAGTCCGCCGAACAGGTCGCGT
TGCGCGCGCGCCGGCTGGGCCTGCAAACCGGCAACGTCAACCTGCTGGCCGAAATCCGCCTCGAAGCCATCCAGGCCGCG
GTGTCGGAACAAAAGCCCACCGTCGCCGTCATCGACTCCATCCAGACGCTCTACAGCGGCGAACTCACGGCGGCGCCGGG
ATCGGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGGCTGGCCAAGCAGACGGGCATTGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAGCACATCGTGGATACCGTGCTGTATTTCGAGGGG
GACACGCATTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCCGTCAACGAGCTTGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGCAAGTCGCCGGTTCGT
GCGTCATGGCCACGCAGGAAGGCACGCGTCCGCTCCTCGTCGAGATCCAGGCGCTGGTCGACAGTTCCCACGCGCCCAAT
CCGCGCCGGCTGACGGTCGGCCTGGAAGGCAACCGTCTGGCCATGCTGCTGGCCGTGCTGCACCGGCACGCGGGCGTGTC
GACCTTCGACCAGGACGTCTTCGTCAATGCGGTCGGCGGCGTGCGCATCACCGAACCCGCGGCCGACCTGCCGGTGCTGC
TGGCCATCATGTCGTCGCTGCGCGACCGGCCGCTGCCGCGCGGGTTGATCGCATTCGGCGAGGTGGGCCTGGCCGGCGAG
ATCCGGCCCGCCCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAACTGGGTTTCTCGGTGGCGCTCATTCCCAAGGC
CAACGCGCCGCGCCAGCCCATCGAAGGCCTGGAGATCTGGGCGGTCGATCGCCTGGACGCGGCACTGGAAAAGCTGCGTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.439

100

0.508
  radA Streptococcus mitis SK321

46.476

100

0.466
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461
  radA Streptococcus pneumoniae TIGR4

48.357

94.04

0.455
  radA Streptococcus pneumoniae R6

48.357

94.04

0.455
  radA Streptococcus pneumoniae Rx1

48.357

94.04

0.455
  radA Streptococcus pneumoniae D39

48.357

94.04

0.455

Multiple sequence alignment